RetrogeneDB ID: | retro_fcat_1739 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E3:30254432..30254861(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 68.97 % |
Parental protein coverage: | 92.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LQLFAD-KVP-KTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG-KSIYGEKFDDENF |
..LFAD.K.P...AENF..LSTGEK.FGYK.SCF.R.IPG.M.QGGD.TRH.GTG..K..YGE..DDENF | |
Retrocopy | VELFAD>KFPSQQAENFPDLSTGEKAFGYKASCFLRTIPG*MRQGGDVTRHVGTGK<KPVYGERSDDENF |
Parental | ILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITI |
ILKH.GPGIL.MA.AGPNT.GS.FFI.TA..E.LDGK.VV.G.VK.G.NI.EAM..F.S.NGKT.KKIT. | |
Retrocopy | ILKHVGPGILPMADAGPNTSGSPFFIPTANME*LDGKRVVAGEVKKGRNIAEAMDCFESGNGKTRKKITV |
Parental | ADCGQ |
.DCGQ | |
Retrocopy | VDCGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |