RetrogeneDB ID: | retro_fcat_531 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:61393586..61394008(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 71.33 % |
Parental protein coverage: | 92.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QLFADKVPKTAENFR-ALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILK |
.L..DKVPKT.ENF...LS..EK.FGYKG.CFH.II.GF.C.G.DFT.H.GTG.KS.YGE.FDDENFILK | |
Retrocopy | ELITDKVPKTTENFL<TLSSEEK*FGYKGACFHKIILGFKCKGHDFTCHDGTGKKSTYGEQFDDENFILK |
Parental | HTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADC |
HT.P.ILSM..A.PN...SQF.I.TAKTE.LDGKHVVFG.VK.GMNIVE.ME.FG.RN.K.S.KI.IADC | |
Retrocopy | HTSPSILSMPYARPNIDDSQFLISTAKTE*LDGKHVVFGKVKKGMNIVETMEHFGPRNSKNS-KIPIADC |
Parental | GQI |
GQI | |
Retrocopy | GQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |