RetrogeneDB ID: | retro_fcat_1733 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E3:37650125..37650575(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 77.33 % |
Parental protein coverage: | 97.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GEVTLRLVLQLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF |
GE.........FADKVPKTAENF.ALSTGE...GYK.SCFHRIIPGFMCQGGDFT.HNGTG.KSIYGEKF | |
Retrocopy | GEPLGHVSFEPFADKVPKTAENFHALSTGENRNGYKVSCFHRIIPGFMCQGGDFT*HNGTGSKSIYGEKF |
Parental | DDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTS |
DDENFILKH..P.ILSM.NAGP.TNGSQFFICT.KTEWLDGKH..FG.VKEGM..V.AME.FG..NGKTS | |
Retrocopy | DDENFILKHICPDILSMENAGPKTNGSQFFICTVKTEWLDGKHIMFGKVKEGMDTVKAMEHFGYKNGKTS |
Parental | KKITIADCGQ |
KK.T.A.CGQ | |
Retrocopy | KKMTTAECGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |