RetrogeneDB ID: | retro_fcat_372 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:20535756..20536165(-) | ||
Located in intron of: | ENSFCAG00000015704 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 68.61 % |
Parental protein coverage: | 88.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KVPKTAENFRALSTGEK-GFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPG |
KVP..A.NF.AL.TG.K.GF.YKGSCFHRIIPGF..QGG.FT.HN.T...SI..EK.DDENFILKHT.PG | |
Retrocopy | KVPNIAQNFCALRTGAK>GFAYKGSCFHRIIPGFIRQGGGFTCHNSTDSESI*REKADDENFILKHTDPG |
Parental | ILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ |
..SMA.AGPNTN.SQFFI.T.KTE.L.GK.V.FG.V.EG.N..E..E.FGSR.GKT.KK.TIA..GQ | |
Retrocopy | VSSMAIAGPNTNSSQFFIHTTKTECLGGKNVTFGKVREGINTMETKECFGSRDGKTGKKLTIAKRGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .80 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .10 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |