RetrogeneDB ID: | retro_fcat_133 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:37223020..37223512(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026216 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 59.56 % |
Parental protein coverage: | 88.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGIL |
VP..AEN..A.STGE.GF.YKGSC.HR.IPGF.CQGGDF...N.TG..SIYGEKF.DENF.....G...L | |
Retrocopy | VPNIAENLSAPSTGEQGFDYKGSCLHRLIPGFTCQGGDFMHCNRTGRESIYGEKFCDENFTHEAHGSWHL |
Parental | SMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI |
........TN.SQFFIC.A..E.L....VV...V.EG.NI.EA.E.FGSR.GK..KKI.IA.CGQI | |
Retrocopy | AHGKYWTQTNASQFFICVANAERLRDGLVVLDKVREGRNIQEATECFGSRHGKAGKKIVIANCGQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |