RetrogeneDB ID: | retro_fcat_1243 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:200961195..200961496(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP5 | ||
Ensembl ID: | ENSFCAG00000006032 | ||
Aliases: | None | ||
Description: | fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560] |
Percent Identity: | 56.31 % |
Parental protein coverage: | 75.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ATLQQLVGRWRLVESKGFDEYMKEVGVGMALRKVGAMAKPDCIISSDGKNLTIKTESTLKTTQFSCNLGE |
AT...L.GR.....S..FD.Y.K.VGVG.AL.KVGAMAKPDC..S.D....T.KTES.LKTTQ.S....E | |
Retrocopy | ATSPRLGGR*CWGQSVDFDDYVKAVGVGSAL*KVGAMAKPDCAVSAD-NSFTVKTESPLKTTQLSYKPEE |
Parental | KFEETTADGRKTQTVCTFTNGALV-QHQEWDGK |
..EET.ADGR.T..V.TF.NGAL..Q...W..K | |
Retrocopy | NLEETAADGRDT-PVGTFANGALA>QERGWERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .21 RPM |
SRP017611_liver | 0 .00 RPM | 9 .10 RPM |