RetrogeneDB ID: | retro_fcat_846 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:70098033..70098426(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028731 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024074 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.08 % |
Parental protein coverage: | 65.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PVKTLDGRSQVSTPRVGKMFDAQATLPKVTRKALGTVNRATENSVKNNGPLKQKQPNFSAKKVTEKTVKA |
PVKTLDGRSQVSTP.VGKM.DA.A.LPK.TRKAL.TV.RATENSVKNNGPLKQKQPNFSAKKVTEKTVKA | |
Retrocopy | PVKTLDGRSQVSTPGVGKMSDAHAALPKATRKALRTVKRATENSVKNNGPLKQKQPNFSAKKVTEKTVKA |
Parental | KSTVPASDDTYPEIEKFIPFNPLDFESFDLPEEHQIAHLPLNGVPLMILDEERELEKLLHL |
K.TVPA.DDTYPEIEKF.PFNPLDFESFDLPEEHQIA.L..NGVPLMILDEERELEKLLHL | |
Retrocopy | KNTVPALDDTYPEIEKFFPFNPLDFESFDLPEEHQIAYLLSNGVPLMILDEERELEKLLHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .23 RPM |
SRP017611_kidney | 0 .10 RPM | 0 .52 RPM |
SRP017611_liver | 0 .00 RPM | 0 .71 RPM |