RetrogeneDB ID:

retro_pvam_431

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_3095:84363..84776(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSPVAG00000015938
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pvam_431
GGATTCAATACAGCCTTACCAAAAGCTACTAGAAAGGCTTTGGGAACTGTCAATAGAGCTATAGAAAACACAATAAAGAC
TAATGGACCTCTCAAACAGAAACAGGCAAAATTCTCTGCCAAAAAAGCGACAGAGAAGACTGCTAAAGCAAAAAGGTCTG
TTCCTTTCTATCCGGAGATAGAAAAATTCTTTCCCTTCAGCCCTCTAGATTTCAAGAGTTTCAACCTGCCTGAAGGGCAC
CAGATCGCACAGCTCTCCTTGAAAGGAATGCCTCTCATGATCCTCGATGAGGAGAGAGAACTTGAAAAGCTGTTACACCT
GGGATCTCCTTCACCTCTGAAGATTCCTTTACATTGCGGGAGTCCAATCTGTTGCAGTCTCCTTCAACCATTCCATTGAC
TCTGGATGTTGAA

ORF - retro_pvam_431 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.83 %
Parental protein coverage: 83.04 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGAPPALPKAARKALGTVNRATEKSVKTNGPLKQKQTTFSAKKVTEKTVKAKTSVPASDDAYPEIEKFFPF
G...ALPKA.RKALGTVNRA.E...KTNGPLKQKQ..FSAK....K..........S...YPEIEKFFPF
RetrocopyGFNTALPKATRKALGTVNRAIENTIKTNGPLKQKQAKFSAK----KATEKTAKAKRSVPFYPEIEKFFPF
ParentalNPLDFESFDLPEEHQIAQLPLNGVPLMILEEERELEKLLHLGPPSPLKMPP-PLWESNPLPSPSSILSTL
.PLDF.SF.LPE.HQIAQL.L.G.PLMIL.EERELEKLLHLG.PSPLK.P...L.ESN.L.SPS.I..TL
RetrocopySPLDFKSFNLPEGHQIAQLSLKGMPLMILDEERELEKLLHLGSPSPLKIPL<TLRESNLLQSPSTIPLTL
ParentalDVE
DVE
RetrocopyDVE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_431 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 26 parental genes, and 72 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000121842 retrocopies
Canis familiaris ENSCAFG000000172641 retrocopy
Choloepus hoffmanni ENSCHOG0000000946411 retrocopies
Callithrix jacchus ENSCJAG000000191654 retrocopies
Cavia porcellus ENSCPOG000000119712 retrocopies
Dasypus novemcinctus ENSDNOG000000240804 retrocopies
Dipodomys ordii ENSDORG000000079681 retrocopy
Felis catus ENSFCAG000000240743 retrocopies
Homo sapiens ENSG000001646114 retrocopies
Gorilla gorilla ENSGGOG000000169375 retrocopies
Loxodonta africana ENSLAFG000000111351 retrocopy
Macropus eugenii ENSMEUG000000059931 retrocopy
Microcebus murinus ENSMICG000000063631 retrocopy
Myotis lucifugus ENSMLUG000000023171 retrocopy
Macaca mulatta ENSMMUG000000230773 retrocopies
Mustela putorius furoENSMPUG000000132413 retrocopies
Nomascus leucogenys ENSNLEG000000043965 retrocopies
Oryctolagus cuniculus ENSOCUG000000148772 retrocopies
Otolemur garnettii ENSOGAG000000123072 retrocopies
Pongo abelii ENSPPYG000000160094 retrocopies
Pan troglodytes ENSPTRG000000174924 retrocopies
Pteropus vampyrus ENSPVAG00000015938 2 retrocopies
retro_pvam_431 , retro_pvam_704,
Sarcophilus harrisii ENSSHAG000000102671 retrocopy
Tupaia belangeri ENSTBEG000000159662 retrocopies
Tursiops truncatus ENSTTRG000000115701 retrocopy
Vicugna pacos ENSVPAG000000095942 retrocopies



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