RetrogeneDB ID: | retro_fcat_878 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:700599..700948(-) | ||
Located in intron of: | ENSFCAG00000012197 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024074 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.74 % |
Parental protein coverage: | 56.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FSAKKVTEKTVKAKSTVPASDDTYPEIEKFIPFNPLDFESFDLPEEHQIAHLPLNGVPLMILDEERELEK |
FSAKKVTEKTVKAKSTVPASDDTYPEIEKF.PFNPLDFESFDL..EHQIAHLPLNGVPLMILDEERELEK | |
Retrocopy | FSAKKVTEKTVKAKSTVPASDDTYPEIEKFFPFNPLDFESFDLLAEHQIAHLPLNGVPLMILDEERELEK |
Parental | LLHL--GPPSPLKMPSQPWESNLLQSPSVLSTLDVELPPV-CYDLDI |
LL.L...P.SPLKMPSQPWESNL.QSPS.L.TLDVELPPV.CYDLDI | |
Retrocopy | LLYLPPTPTSPLKMPSQPWESNLWQSPSILLTLDVELPPV>CYDLDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 0 .23 RPM |
SRP017611_kidney | 0 .62 RPM | 0 .52 RPM |
SRP017611_liver | 0 .30 RPM | 0 .71 RPM |