RetrogeneDB ID: | retro_cpor_1151 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:50724523..50724948(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011971 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.74 % |
Parental protein coverage: | 71.36 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MATRIFVDKENGELGARGAPKDGLK-LGSRPAVKALDGRLQVSTPHVGKM-FNAPQALPKTGRKAL-GTV |
MAT.IF.DKEN..LG...APKDG.K.....PAV.A.D...QVS.P.VGK..F.AP....K..RKAL.GT. | |
Retrocopy | MATLIFFDKENEDLGISVAPKDGSK<VA*SPAV*AVDEKFQVSAPCVGKI<FVAPPVELKAARKAL<GTI |
Parental | NRATEKSVKNNGPLGQKP-NFSAKKVTEKTVK-TQSSVPASDDAYPEIEKFFPFNPLDFESFDLPEEHQI |
NRATEK....NGP...K..N...KK..E..VK....S.PA.DD.YPE.EK.FPFNPLD.E...L...HQ. | |
Retrocopy | NRATEKLANGNGPFKLKQSNDFSKKMKE*IVK<SKLSIPACDDTYPETEKYFPFNPLDLENSYLLDKHQV |
Parental | AQLPLSG |
A..P..G | |
Retrocopy | AHWPPHG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 2 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .41 RPM |
SRP017611_liver | 0 .00 RPM | 1 .26 RPM |
SRP040447_lung | 0 .00 RPM | 2 .90 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .77 RPM |