RetrogeneDB ID: | retro_cpor_820 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:2262364..2262720(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011971 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.65 % |
Parental protein coverage: | 59.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | GSRPAVKALDGRLQVSTPHVGKM-FNAPQALPKTGR-KALGTVNRATEKSVKNNGPLGQK-PNFSAKKVT |
GS.PAV..L.G..QVSTP......F..P.ALPK....K.LGTVNR.TEKSV..NGP..QK.PN.SAKK.. | |
Retrocopy | GSGPAV*TLEGKCQVSTPRFARI<FGVPPALPKAAK<KSLGTVNRTTEKSVNINGPFKQKQPNASAKKLI |
Parental | EKTVKTQSS-VPASDDAYPEIEKFFPFNPLDFESFDLPEEHQIAQLP-LSGVPL |
...VKT......AS.D.YPE....FP...LD.E...LPEEHQIAQLP...G.PL | |
Retrocopy | QQAVKTKTP<IAASNDTYPEEKNNFPQYALDLERSHLPEEHQIAQLP<SNGMPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 2 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .41 RPM |
SRP017611_liver | 0 .00 RPM | 1 .26 RPM |
SRP040447_lung | 0 .00 RPM | 2 .90 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .77 RPM |