RetrogeneDB ID: | retro_vpac_178 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2439:292596..292962(-) | ||
Located in intron of: | ENSVPAG00000004944 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSVPAG00000009594 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.58 % |
Parental protein coverage: | 60.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LKQIQTTFSTKKITEKTVKAKSSVPASDDTYPEIEKFFPFNPLDFESFDLPEEHQIAQLPLNGVPLMMLD |
L....TTFSTKK.TEKT.KAKSSVPASDD..PEIEKFF.FN.LDFESFDLP.EH.IAQLPLNGV.L..LD | |
Retrocopy | LSNRKTTFSTKKMTEKTIKAKSSVPASDDSNPEIEKFFLFNLLDFESFDLPKEHRIAQLPLNGVFLVILD |
Parental | EERHLEQLLHLGPPSPLKMPPPPWESNLLQSPSSI-LSTLDVE-LPPVCYNFDI |
EE.H.E.L.HLGP..PLKMP.P..ESNLL..P..I.LSTLDVE...PVCY..DI | |
Retrocopy | EEGHHE*L*HLGPSLPLKMPLPLRESNLLRYPPRI>LSTLDVE<MRPVCYDLDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |