RetrogeneDB ID: | retro_mmul_1629 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:105533133..105533488(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.18566 | ||
Ensembl ID: | ENSMMUG00000023077 | ||
Aliases: | PTTG1, securin | ||
Description: | securin [Source:RefSeq peptide;Acc:NP_001182151] |
Percent Identity: | 67.77 % |
Parental protein coverage: | 58.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KQPNFSAKKMTEKTVKTKSSVPASDDAYPEIEKFFPFNPLDFES-FDLPEEHQIAHLPLSGVPLMILDEE |
.QP.FSA..MT.KTVK.KSS.PAS.D.YPE.EK.FPFN.LD.E..FDL.EEHQI.HLPL.GVP.MILDE. | |
Retrocopy | EQPTFSARHMTGKTVKAKSSLPASNDTYPEKEKSFPFNLLDYEN<FDLLEEHQIVHLPLNGVPFMILDEK |
Parental | RELEKLFQLG-PPSPVKMPSPPWESNLLQSPSSILSTLDVELPPVCCDIDI |
RELE.L.Q...PP...KM.S.PW.SN..QSPSSIL.T.DV.LPPVC...DI | |
Retrocopy | RELEQLLQVS<PPLAMKMLSLPWGSNQSQSPSSIL*T*DVQLPPVCSHMDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .02 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 2 .22 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .55 RPM |
SRP007412_heart | 0 .00 RPM | 1 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .59 RPM |
SRP007412_liver | 0 .00 RPM | 0 .40 RPM |
SRP007412_testis | 0 .19 RPM | 75 .61 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3823 |
Pan troglodytes | retro_ptro_2601 |
Pongo abelii | retro_pabe_3071 |