RetrogeneDB ID:

retro_ptro_610

Retrocopy
location
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:60957850..60958447(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PTTG1
Ensembl ID:ENSPTRG00000017492
Aliases:PTTG1, Securin
Description:Pan troglodytes pituitary tumor-transforming 1 (PTTG1), mRNA. [Source:RefSeq mRNA;Acc:NM_001135616]


Retrocopy-Parental alignment summary:






>retro_ptro_610
CTGATCTATGTTGATAAGGAGAATGGAGAACCAGGTATCCATGCAGCTCCTAAAGATAGGCTGACGCTGGGATCTGGACC
TTCAATCAAAGCCTTAGAGGGGAGATCTCAAGTTTCAACACCACGTGCTGGCAAAATGTCCAATGCTTTACCAGCCTTAC
CTAAAGCTACCAGAAAGTCTTTTGGAACTGTCAACAGGGCTACAGAAACGTGAGTAAAGACCAACGGACTCCTCAAACTA
AAACACCCAAATTTCTCTGCCAAAAAGATGACCAGGAAGACTGTTAAAGCAAAAAGCTCTGTTCCTTCCTCAGATAATGC
CTACCCAGAAATAGAAAAATTATTTCACTTCAATCTTCTAGATTTTGAGAGTTTTAACCAACCTGAAGTGCACCAGATTG
CAGGCCTCCCCTTGAGTGGAGTGCCTCTTATGATCCTTGATAAGGAGAGAGAGCTTGAAAAGCTGTTTCAGCTGGGCCCG
TCTTCGCCTGTGATGATGCCCTCTCCGCCATGGGAACCCAATCTGTTGCAGTATCCTTCAACCCTTCTGTTGACCCTGGA
TGTTGAATTGCCACCTGTTTACTATGACATAAATATT

ORF - retro_ptro_610 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.89 %
Parental protein coverage: 98.51 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLIYVDKENGEPGTRVAAKDGLKLGSGPSIKALDGRSQVSTPRFGKTFDAPPALPKATRKALGTVNRATEK
LIYVDKENGEPG...A.KD.L.LGSGPSIKAL.GRSQVSTPR.GK...A.PALPKATRK..GTVNRATE.
RetrocopyLIYVDKENGEPGIHAAPKDRLTLGSGPSIKALEGRSQVSTPRAGKMSNALPALPKATRKSFGTVNRATET
ParentalSVKTKGPLKQKQPSFSAKKMTEKTVKAKSSVPASDDAYPEIEKFFPFNPLDFESFDLPEEHQIAHLPLSG
.VKT.G.LK.K.P.FSAKKMT.KTVKAKSSVP.SD.AYPEIEK.F.FN.LDFESF..PE.HQIA.LPLSG
Retrocopy*VKTNGLLKLKHPNFSAKKMTRKTVKAKSSVPSSDNAYPEIEKLFHFNLLDFESFNQPEVHQIAGLPLSG
ParentalVPLMILDEERELEKLFQLGPPSPVKMPSPPWESNLLQSPSSILSTLDVELPPVCCDIDI
VPLMILD.ERELEKLFQLGP.SPV.MPSPPWE.NLLQ.PS..L.TLDVELPPV..DI.I
RetrocopyVPLMILDKERELEKLFQLGPSSPVMMPSPPWEPNLLQYPSTLLLTLDVELPPVYYDINI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .02 RPM 1 .68 RPM
SRP007412_cerebellum 0 .00 RPM 2 .01 RPM
SRP007412_heart 0 .00 RPM 0 .41 RPM
SRP007412_kidney 0 .05 RPM 0 .84 RPM
SRP007412_liver 0 .00 RPM 3 .40 RPM
SRP007412_testis 0 .00 RPM 143 .95 RPM
Pan troglodytes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ptro_610 retrocopy.
Pan troglodytes was not studied using FANTOM5 data.
retro_ptro_610 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ptro_610 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_881

Parental genes homology:
Parental genes homology involve 26 parental genes, and 72 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000121842 retrocopies
Canis familiaris ENSCAFG000000172641 retrocopy
Choloepus hoffmanni ENSCHOG0000000946411 retrocopies
Callithrix jacchus ENSCJAG000000191654 retrocopies
Cavia porcellus ENSCPOG000000119712 retrocopies
Dasypus novemcinctus ENSDNOG000000240804 retrocopies
Dipodomys ordii ENSDORG000000079681 retrocopy
Felis catus ENSFCAG000000240743 retrocopies
Homo sapiens ENSG000001646114 retrocopies
Gorilla gorilla ENSGGOG000000169375 retrocopies
Loxodonta africana ENSLAFG000000111351 retrocopy
Macropus eugenii ENSMEUG000000059931 retrocopy
Microcebus murinus ENSMICG000000063631 retrocopy
Myotis lucifugus ENSMLUG000000023171 retrocopy
Macaca mulatta ENSMMUG000000230773 retrocopies
Mustela putorius furoENSMPUG000000132413 retrocopies
Nomascus leucogenys ENSNLEG000000043965 retrocopies
Oryctolagus cuniculus ENSOCUG000000148772 retrocopies
Otolemur garnettii ENSOGAG000000123072 retrocopies
Pongo abelii ENSPPYG000000160094 retrocopies
Pan troglodytes ENSPTRG00000017492 4 retrocopies
Pteropus vampyrus ENSPVAG000000159382 retrocopies
Sarcophilus harrisii ENSSHAG000000102671 retrocopy
Tupaia belangeri ENSTBEG000000159662 retrocopies
Tursiops truncatus ENSTTRG000000115701 retrocopy
Vicugna pacos ENSVPAG000000095942 retrocopies



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