RetrogeneDB ID: | retro_hsap_1365 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:75340386..75340954(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000258587 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METTL5 | ||
Ensembl ID: | ENSG00000138382 | ||
Aliases: | METTL5, HSPC133 | ||
Description: | methyltransferase like 5 [Source:HGNC Symbol;Acc:25006] |
Percent Identity: | 78.76 % |
Parental protein coverage: | 91.39 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MKKVRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCGVLSIGTA |
MK..RLKELES.LQ.VDGFEK.KLLLEQYPT..HIAACMLY.IH.TYDDIE..V.ADLGC..G.LS.GTA | |
Retrocopy | MKELRLKELESHLQ*VDGFEKAKLLLEQYPTKLHIAACMLYAIHSTYDDIESEVFADLGCSGGMLSMGTA |
Parental | MLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDVCLLSNRMS-KSFDTVIMNPPFGTKNNKGTDM |
..GAG.CVGFD.DED.LEI.NRN.EEFELTNIDMVQCDVCLLSNRMS.KSFDTVIMNPPFGTKNNKG.DM | |
Retrocopy | V*GAGFCVGFDRDEDVLEIVNRNVEEFELTNIDMVQCDVCLLSNRMS<KSFDTVIMNPPFGTKNNKGIDM |
Parental | AFLKTALEMARTAVYSLHKSSTREHVQKKAAEWK-IKIDIIAELRYDLPASYK |
AFLKTALEMARTAVYSLHKSS.......K....K.IKID.I.EL..DLPASYK | |
Retrocopy | AFLKTALEMARTAVYSLHKSS-ENMLKRKLQNGK<IKIDMISELWDDLPASYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .06 RPM | 22 .54 RPM |
bodymap2_adrenal | 0 .00 RPM | 25 .71 RPM |
bodymap2_brain | 0 .00 RPM | 20 .02 RPM |
bodymap2_breast | 0 .00 RPM | 36 .58 RPM |
bodymap2_colon | 0 .00 RPM | 42 .04 RPM |
bodymap2_heart | 0 .00 RPM | 20 .79 RPM |
bodymap2_kidney | 0 .00 RPM | 25 .27 RPM |
bodymap2_liver | 0 .00 RPM | 11 .45 RPM |
bodymap2_lung | 0 .00 RPM | 13 .63 RPM |
bodymap2_lymph_node | 0 .00 RPM | 17 .47 RPM |
bodymap2_ovary | 0 .00 RPM | 18 .83 RPM |
bodymap2_prostate | 0 .00 RPM | 31 .38 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 27 .06 RPM |
bodymap2_testis | 0 .00 RPM | 35 .67 RPM |
bodymap2_thyroid | 0 .00 RPM | 25 .31 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 11 .71 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_40484 | 563 libraries | 639 libraries | 610 libraries | 14 libraries | 3 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_938 |
Gorilla gorilla | retro_ggor_1064 |
Macaca mulatta | retro_mmul_2193 |
Callithrix jacchus | retro_cjac_729 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000003343 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013460 | 2 retrocopies | |
Homo sapiens | ENSG00000138382 | 2 retrocopies |
retro_hsap_1365 , retro_hsap_2930,
|
Gorilla gorilla | ENSGGOG00000022484 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018044 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023054 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005018 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010405 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012916 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012621 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |