RetrogeneDB ID: | retro_pabe_2281 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:6173848..6174208(-) | ||
Located in intron of: | ENSPPYG00000013449 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METTL5 | ||
Ensembl ID: | ENSPPYG00000012916 | ||
Aliases: | None | ||
Description: | methyltransferase like 5 [Source:HGNC Symbol;Acc:25006] |
Percent Identity: | 77.5 % |
Parental protein coverage: | 57.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | HIAACMLYTIHNTYDDIENKVVADLGCGCGVLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFGLTNID |
H..A.M.YTIHNT.D..ENKV.ADLGCGCGVLS.GTAMLGA.L.VGFDID..AL.IFNRN.EE..LT... | |
Retrocopy | HSEARMPYTIHNTCDEVENKVAADLGCGCGVLSLGTAMLGAKLYVGFDIDAGALGIFNRNVEESELTYVG |
Parental | MVQCDVCLLSNRMSKSFDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAV |
MVQ.DVC.LSN.MSKSFDT.I.NPPFGTKNNKGTDMAF.KT.LEMARTAV | |
Retrocopy | MVQHDVCSLSNGMSKSFDTAILNPPFGTKNNKGTDMAFPKTTLEMARTAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .80 RPM |
SRP007412_heart | 0 .00 RPM | 13 .03 RPM |
SRP007412_kidney | 0 .03 RPM | 5 .40 RPM |
SRP007412_liver | 0 .03 RPM | 2 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000003343 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013460 | 2 retrocopies | |
Homo sapiens | ENSG00000138382 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022484 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018044 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023054 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005018 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010405 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012916 | 2 retrocopies |
retro_pabe_2281 , retro_pabe_2523,
|
Pan troglodytes | ENSPTRG00000012621 | 3 retrocopies |