RetrogeneDB ID: | retro_mmul_1953 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:74177511..74178141(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METTL5 | ||
Ensembl ID: | ENSMMUG00000023054 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | MKKLRLKELESRLQQVDGFEKP-KLLLEQYPTRPHIAACMLYTIHNTYDDIENKVIADLGCGCGVLSIGT |
MKKLRLK.L...LQ.VDGF..P..LLLE..P.R..I.AC.LYTIH.T.DDI..KV.ADL..G..VLSI.. | |
Retrocopy | MKKLRLKGLQCQLQ*VDGFK*P<RLLLE*NPARVYI*ACVLYTIHYTWDDIKIKVSADLEHGGRVLSIPA |
Parental | AMLGAGL-CVGFDIDEDALEIFNRNVEEFELTNIDMVQCDVCLLSNRMSKSFDTVIMNPPFGTKNNKGT- |
...GAGL..V..D.DEDAL..FNRNVEEF.L.N..MV.CD.C....RMSKS.DTVIMN..FGTKNNK... | |
Retrocopy | TTVGAGL<VVVLDTDEDALKMFNRNVEEFDLVNVVMVYCDTCSQFKRMSKSLDTVIMNSHFGTKNNKVIF |
Parental | -DMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKIKIDIIAELRYDLPASYKFHKKKSVDIEV-DLI |
.D...LKTALEMART.VY.LHKSST..H.Q...AE.K..ID.I.ELRYDLPAS...HKK.SVD.EV..LI | |
Retrocopy | KDITSLKTALEMARTVVYILHKSSTKKHAQQ*VAE*KTEIDVITELRYDLPASCNCHKKRSVDVEV<ELI |
Parental | RFSF |
.FSF | |
Retrocopy | QFSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 3 .14 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .68 RPM |
SRP007412_heart | 0 .00 RPM | 3 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .22 RPM |
SRP007412_liver | 0 .00 RPM | 2 .93 RPM |
SRP007412_testis | 0 .00 RPM | 4 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2930 |
Pan troglodytes | retro_ptro_2062 |
Gorilla gorilla | retro_ggor_2032 |
Pongo abelii | retro_pabe_2523 |
Callithrix jacchus | retro_cjac_2282 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000003343 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013460 | 2 retrocopies | |
Homo sapiens | ENSG00000138382 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022484 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018044 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023054 | 3 retrocopies |
retro_mmul_1430, retro_mmul_1953 , retro_mmul_2193,
|
Nomascus leucogenys | ENSNLEG00000005018 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010405 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012916 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012621 | 3 retrocopies |