RetrogeneDB ID: | retro_ptro_2062 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 4:74796639..74797269(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METTL5 | ||
Ensembl ID: | ENSPTRG00000012621 | ||
Aliases: | None | ||
Description: | methyltransferase like 5 [Source:HGNC Symbol;Acc:25006] |
Percent Identity: | 63.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | MKKVRLKELESRLQQVDGFEKP-KLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCGVLSIGT |
.KK.RLK.L...L..VDGF..P...LLE.Y.....I.AC.LYTIH.T.DDIE.KVVADL..G..VLSI.. | |
Retrocopy | VKKLRLKGLQCQLH*VDGFKQP<R*LLE*YLASVYI*ACVLYTIHYTGDDIEIKVVADLEHGGRVLSIQA |
Parental | AMLGAGL-CVGFDIDEDALEIFNRNAEEFELTNIDMVQCDVCLLSNRMSKSFDTVIMNPPFGTKNNKGT- |
.M.GAGL..V..DIDEDAL.IFNRN.EEF.L.N..MV.CD.C....RMSKS.DTVIMNP.FGTKNNK... | |
Retrocopy | TMVGAGL<VVVLDIDEDALKIFNRNVEEFDLANVVMVYCDMCS*FKRMSKSLDTVIMNPHFGTKNNKVIF |
Parental | -DMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKIKIDIIAELRYDLPASYKFHKKKSVDIEV-DLI |
.D...LKTA.EMART..Y.LHKSST..H.QKK.AE.KI.I..I.ELRYDLPAS...HKK.SVD.EV..LI | |
Retrocopy | KDITSLKTASEMARTVIYILHKSSTTKHAQKKVAE*KIEINVITELRYDLPASCNCHKKRSVDVEV<ELI |
Parental | RFSF |
.FSF | |
Retrocopy | QFSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .41 RPM |
SRP007412_heart | 0 .00 RPM | 11 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .68 RPM |
SRP007412_liver | 0 .00 RPM | 4 .88 RPM |
SRP007412_testis | 0 .00 RPM | 10 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2930 |
Gorilla gorilla | retro_ggor_2032 |
Pongo abelii | retro_pabe_2523 |
Macaca mulatta | retro_mmul_1953 |
Callithrix jacchus | retro_cjac_2282 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000003343 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013460 | 2 retrocopies | |
Homo sapiens | ENSG00000138382 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022484 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018044 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023054 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005018 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010405 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012916 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012621 | 3 retrocopies |
retro_ptro_1822, retro_ptro_2062 , retro_ptro_938,
|