RetrogeneDB ID: retro_nleu_1070

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397280.1:11983794..11984088(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL5
• Ensembl ID: ENSNLEG00000005018
• Aliases: None
• Description: None

Sequence

>retro_nleu_1070
ATGAAGGAATTAAGGCTTAAGGAACTAGAGAGTCACCTGAAATAATTGGATGGATTCTAAAAGGCCAAGCTACTTCTAGA
ACAGTATCCCACCAAGCTTCACATTGCAGCATGTATGCTCTATGCAATCCATAACACTTATGATGACATTGAAAGTGAAG
TTTTTGCAGATCTAGGCTGTAGTTGTGGAATGCTTAGCATCAGAACTGCAGTGTTAGGAGCAGGGTTGTGTGTTGGATTT
GACAGAGATGAAGATGTATTGGAAATATTTAATAGGAATGTGGAAGAGTTTGAG

Alignment

ORF - retro_nleu_1070 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.55 %
• Parental protein coverage: 75.38 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MKKIRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCGVLNIGTA
          MK..RLKELES.L...DGF.K.KLLLEQYPT..HIAACMLY.IHNTYDDIE..V.ADLGC.CG.L.I.TA
Retrocopy MKELRLKELESHLK*LDGF*KAKLLLEQYPTKLHIAACMLYAIHNTYDDIESEVFADLGCSCGMLSIRTA

Parental  MLGAGLCVGFDIDEDALEIFNRNAEEFE
          .LGAGLCVGFD.DED.LEIFNRN.EEFE
Retrocopy VLGAGLCVGFDRDEDVLEIFNRNVEEFE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1070 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000003343	1 retrocopy	retro_cpor_373,
Dasypus novemcinctus	ENSDNOG00000013460	2 retrocopies	retro_dnov_1043, retro_dnov_773,
Homo sapiens	ENSG00000138382	2 retrocopies	retro_hsap_1365, retro_hsap_2930,
Gorilla gorilla	ENSGGOG00000022484	2 retrocopies	retro_ggor_1064, retro_ggor_2032,
Loxodonta africana	ENSLAFG00000018044	2 retrocopies	retro_lafr_1213, retro_lafr_864,
Macaca mulatta	ENSMMUG00000023054	3 retrocopies	retro_mmul_1430, retro_mmul_1953, retro_mmul_2193,
Nomascus leucogenys	ENSNLEG00000005018	4 retrocopies	retro_nleu_1070 , retro_nleu_1919, retro_nleu_753, retro_nleu_990,
Oryctolagus cuniculus	ENSOCUG00000010405	1 retrocopy	retro_ocun_1440,
Pongo abelii	ENSPPYG00000012916	2 retrocopies	retro_pabe_2281, retro_pabe_2523,
Pan troglodytes	ENSPTRG00000012621	3 retrocopies	retro_ptro_1822, retro_ptro_2062, retro_ptro_938,