RetrogeneDB ID: | retro_mmul_2193 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:137985605..137986176(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METTL5 | ||
Ensembl ID: | ENSMMUG00000023054 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.9 % |
Parental protein coverage: | 96.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MKKLRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVIADLGCGCGVLSIGTA |
MK.LRLKELES.LQ.VD.FEK.KLLL.QYPT..HIAACMLY.I.N.YDDIEN.V.ADLGC.CG.LSIGTA | |
Retrocopy | MKELRLKELESCLQ*VDRFEKAKLLLKQYPTKLHIAACMLYAIYNPYDDIENEVFADLGCSCGMLSIGTA |
Parental | MLGAGLCVGFDIDEDALEIFNRNVEEFELTNIDMVQCDVCLLSNRMS-KSFDTVIMNPPFGTKNNKGTDM |
.LGAGLCVGFD.DED.LEIFNRNVEEFELTNIDMVQCDVCLL.NRMS.KSFDTVIMNPPFGTKNNKG.D. | |
Retrocopy | VLGAGLCVGFDRDEDVLEIFNRNVEEFELTNIDMVQCDVCLLPNRMS<KSFDTVIMNPPFGTKNNKGIDT |
Parental | AFLKTALEMARTAVYSLHKSSTREHVQKKAAEWK-IKIDIIAELRYDLPASYKF |
AFLKTALEMARTAVYSLHKSS.......K....K.IKID.I.EL..DLPASY.F | |
Retrocopy | AFLKTALEMARTAVYSLHKSS-ENMLKRKLQNGK<IKIDMISELQDDLPASYEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 3 .14 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .68 RPM |
SRP007412_heart | 0 .00 RPM | 3 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .22 RPM |
SRP007412_liver | 0 .00 RPM | 2 .93 RPM |
SRP007412_testis | 0 .00 RPM | 4 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1365 |
Pan troglodytes | retro_ptro_938 |
Gorilla gorilla | retro_ggor_1064 |
Callithrix jacchus | retro_cjac_729 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000003343 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013460 | 2 retrocopies | |
Homo sapiens | ENSG00000138382 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022484 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018044 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023054 | 3 retrocopies |
retro_mmul_1430, retro_mmul_1953, retro_mmul_2193 ,
|
Nomascus leucogenys | ENSNLEG00000005018 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010405 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012916 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012621 | 3 retrocopies |