RetrogeneDB ID: | retro_hsap_2574 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 22:24665316..24665655(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000215464 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS10 | ||
Ensembl ID: | ENSG00000124614 | ||
Aliases: | RPS10, DBA9, S10 | ||
Description: | ribosomal protein S10 [Source:HGNC Symbol;Acc:10383] |
Percent Identity: | 92.04 % |
Parental protein coverage: | 67.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SRGY-VKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEA |
SRGY.VKEQFAWRH.YWYLTNE.IQYLRDYLHLP.EIVPATLRRSRP.TGRPR.KGLEGERPARLTRGEA | |
Retrocopy | SRGYYVKEQFAWRHVYWYLTNEDIQYLRDYLHLPLEIVPATLRRSRPGTGRPRSKGLEGERPARLTRGEA |
Parental | DRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ |
DRDTYRRSAVPPGADKKAEAGAGSATEFQFRG.FGRG..QPPQ | |
Retrocopy | DRDTYRRSAVPPGADKKAEAGAGSATEFQFRGKFGRGHRQPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 30 .51 RPM |
bodymap2_adrenal | 0 .04 RPM | 65 .30 RPM |
bodymap2_brain | 0 .02 RPM | 3 .61 RPM |
bodymap2_breast | 0 .04 RPM | 33 .87 RPM |
bodymap2_colon | 0 .00 RPM | 20 .48 RPM |
bodymap2_heart | 0 .00 RPM | 1 .90 RPM |
bodymap2_kidney | 0 .00 RPM | 6 .35 RPM |
bodymap2_liver | 0 .00 RPM | 2 .53 RPM |
bodymap2_lung | 0 .00 RPM | 7 .21 RPM |
bodymap2_lymph_node | 0 .00 RPM | 9 .17 RPM |
bodymap2_ovary | 0 .00 RPM | 57 .73 RPM |
bodymap2_prostate | 0 .00 RPM | 8 .95 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 3 .66 RPM |
bodymap2_testis | 0 .09 RPM | 14 .37 RPM |
bodymap2_thyroid | 0 .02 RPM | 25 .57 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 9 .71 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CHO | POLR2A | 22:24666346..24667573 |
ENCFF002CJE | POLR2A | 22:24666644..24667236 |
ENCFF002CMI | POLR2A | 22:24666646..24667428 |
ENCFF002COJ | POLR2A | 22:24666387..24666823 |
ENCFF002CQA | POLR2A | 22:24666422..24666680 |
ENCFF002CQK | POLR2A | 22:24666653..24667287 |
ENCFF002CRK | POLR2A | 22:24666619..24667143 |
ENCFF002CSY | POLR2A | 22:24666625..24667243 |
ENCFF002CZW | POLR2A | 22:24666649..24667222 |
ENCFF002CZY | POLR2A | 22:24666642..24667364 |
ENCFF002DAS | POLR2A | 22:24666652..24667128 |
ENCFF002DAY | POLR2A | 22:24666564..24667200 |
ENCFF002DBB | POLR2A | 22:24666456..24666656 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |