RetrogeneDB ID: | retro_hsap_869 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:46450205..46450700(-) | ||
Located in intron of: | ENSG00000110497 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000244313 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS10 | ||
Ensembl ID: | ENSG00000124614 | ||
Aliases: | RPS10, DBA9, S10 | ||
Description: | ribosomal protein S10 [Source:HGNC Symbol;Acc:10383] |
Percent Identity: | 99.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY |
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY | |
Retrocopy | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY |
Parental | LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKA |
LTNEGIQYLRDYLHLPPEIVPA.LRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKA | |
Retrocopy | LTNEGIQYLRDYLHLPPEIVPAILRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKA |
Parental | EAGAGSATEFQFRGGFGRGRGQPPQ |
EAGAGSATEFQFRGGFGRGRGQPPQ | |
Retrocopy | EAGAGSATEFQFRGGFGRGRGQPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .91 RPM | 30 .51 RPM |
bodymap2_adrenal | 1 .74 RPM | 65 .30 RPM |
bodymap2_brain | 1 .10 RPM | 3 .61 RPM |
bodymap2_breast | 1 .23 RPM | 33 .87 RPM |
bodymap2_colon | 1 .10 RPM | 20 .48 RPM |
bodymap2_heart | 0 .13 RPM | 1 .90 RPM |
bodymap2_kidney | 0 .79 RPM | 6 .35 RPM |
bodymap2_liver | 0 .38 RPM | 2 .53 RPM |
bodymap2_lung | 0 .69 RPM | 7 .21 RPM |
bodymap2_lymph_node | 1 .30 RPM | 9 .17 RPM |
bodymap2_ovary | 2 .26 RPM | 57 .73 RPM |
bodymap2_prostate | 1 .70 RPM | 8 .95 RPM |
bodymap2_skeletal_muscle | 0 .67 RPM | 3 .66 RPM |
bodymap2_testis | 1 .58 RPM | 14 .37 RPM |
bodymap2_thyroid | 0 .70 RPM | 25 .57 RPM |
bodymap2_white_blood_cells | 1 .02 RPM | 9 .71 RPM |
Experiment type: | PCR amplification |
---|---|
Forward primer: | AAAAGGTTTTTCTGTGGAGTTCGAG (25 nt long) |
Reverse primer: | CAACATCTGGCAGGTCTCCGC (21 nt long) |
Anneling temperature: | 51 °C |
(Expected) product size: | 245 |
Electrophoresis gel image: | ![]() |
Additional comment: | Red arrow indicates PCR product of retrogene in pooled cDNA from 16 human tissues (Clontech). Red number of lane indicates particular retrogene; L - GeneRuler 100 bp DNA Ladder (Thermo Fisher Scientific); N - No template control (water instead of cDNA) |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_603 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 6 .38 RPM |
CEU_NA11843 | 6 .63 RPM |
CEU_NA11930 | 5 .80 RPM |
CEU_NA12004 | 3 .80 RPM |
CEU_NA12400 | 7 .96 RPM |
CEU_NA12751 | 4 .37 RPM |
CEU_NA12760 | 9 .30 RPM |
CEU_NA12827 | 7 .12 RPM |
CEU_NA12872 | 5 .04 RPM |
CEU_NA12873 | 5 .04 RPM |
FIN_HG00183 | 5 .77 RPM |
FIN_HG00277 | 7 .06 RPM |
FIN_HG00315 | 4 .91 RPM |
FIN_HG00321 | 4 .62 RPM |
FIN_HG00328 | 4 .40 RPM |
FIN_HG00338 | 6 .41 RPM |
FIN_HG00349 | 7 .51 RPM |
FIN_HG00375 | 4 .43 RPM |
FIN_HG00377 | 4 .36 RPM |
FIN_HG00378 | 3 .93 RPM |
GBR_HG00099 | 4 .50 RPM |
GBR_HG00111 | 5 .09 RPM |
GBR_HG00114 | 4 .68 RPM |
GBR_HG00119 | 4 .00 RPM |
GBR_HG00131 | 3 .62 RPM |
GBR_HG00133 | 5 .19 RPM |
GBR_HG00134 | 4 .85 RPM |
GBR_HG00137 | 5 .69 RPM |
GBR_HG00142 | 4 .20 RPM |
GBR_HG00143 | 4 .75 RPM |
TSI_NA20512 | 6 .58 RPM |
TSI_NA20513 | 2 .51 RPM |
TSI_NA20518 | 4 .83 RPM |
TSI_NA20532 | 5 .41 RPM |
TSI_NA20538 | 5 .02 RPM |
TSI_NA20756 | 5 .64 RPM |
TSI_NA20765 | 3 .81 RPM |
TSI_NA20771 | 6 .58 RPM |
TSI_NA20786 | 4 .52 RPM |
TSI_NA20798 | 4 .43 RPM |
YRI_NA18870 | 6 .19 RPM |
YRI_NA18907 | 4 .96 RPM |
YRI_NA18916 | 4 .06 RPM |
YRI_NA19093 | 4 .45 RPM |
YRI_NA19099 | 5 .38 RPM |
YRI_NA19114 | 4 .12 RPM |
YRI_NA19118 | 5 .72 RPM |
YRI_NA19213 | 3 .25 RPM |
YRI_NA19214 | 3 .42 RPM |
YRI_NA19223 | 4 .93 RPM |