RetrogeneDB ID: | retro_hsap_3232 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:115898257..115898706(+) | ||
Located in intron of: | ENSG00000092421 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000239528 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSG00000164587 | ||
Aliases: | RPS14, EMTB, S14 | ||
Description: | ribosomal protein S14 [Source:HGNC Symbol;Acc:10387] |
Percent Identity: | 88.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
MAPRKGKEK.EEQVISL.PQVA.GEN.FGV.HI.A.FNDTFVHVTDLSGKET.CRVTGGMKVKADRDES. | |
Retrocopy | MAPRKGKEK-EEQVISL*PQVADGENIFGVRHIVAPFNDTFVHVTDLSGKETLCRVTGGMKVKADRDESL |
Parental | PYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSAL-RALARSGMKIGRIEDVTPIPSDS |
PYAAMLAAQD.AQRCKELGITALHIK.RATGGNRTKTPGPGAQSAL.RALA.SGMK.G.IEDV.PI.SDS | |
Retrocopy | PYAAMLAAQDMAQRCKELGITALHIKHRATGGNRTKTPGPGAQSAL<RALAPSGMKMGWIEDVPPILSDS |
Parental | TRRKGGRRGRRL |
TRRKGGRRGR.L | |
Retrocopy | TRRKGGRRGRHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 639 .89 RPM |
bodymap2_adrenal | 0 .10 RPM | 859 .94 RPM |
bodymap2_brain | 0 .07 RPM | 215 .93 RPM |
bodymap2_breast | 0 .00 RPM | 544 .48 RPM |
bodymap2_colon | 0 .00 RPM | 825 .31 RPM |
bodymap2_heart | 0 .04 RPM | 153 .10 RPM |
bodymap2_kidney | 0 .06 RPM | 313 .72 RPM |
bodymap2_liver | 0 .04 RPM | 140 .62 RPM |
bodymap2_lung | 0 .28 RPM | 540 .54 RPM |
bodymap2_lymph_node | 0 .04 RPM | 522 .77 RPM |
bodymap2_ovary | 0 .17 RPM | 754 .52 RPM |
bodymap2_prostate | 0 .00 RPM | 706 .05 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 380 .07 RPM |
bodymap2_testis | 0 .11 RPM | 469 .12 RPM |
bodymap2_thyroid | 0 .08 RPM | 478 .14 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 888 .14 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_147894 | 93 libraries | 87 libraries | 492 libraries | 271 libraries | 886 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2184 |
Gorilla gorilla | retro_ggor_2199 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .06 RPM |
CEU_NA11843 | 0 .40 RPM |
CEU_NA11930 | 0 .16 RPM |
CEU_NA12004 | 0 .30 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .49 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .16 RPM |
FIN_HG00183 | 0 .08 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .44 RPM |
FIN_HG00321 | 0 .63 RPM |
FIN_HG00328 | 0 .07 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .37 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .35 RPM |
FIN_HG00378 | 0 .17 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .42 RPM |
GBR_HG00119 | 0 .36 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .43 RPM |
GBR_HG00134 | 0 .04 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .07 RPM |
TSI_NA20518 | 0 .47 RPM |
TSI_NA20532 | 0 .20 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .33 RPM |
TSI_NA20771 | 0 .43 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .36 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .27 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .17 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .22 RPM |
YRI_NA19223 | 0 .08 RPM |