RetrogeneDB ID: | retro_pabe_2487 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:166984325..166984695(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSPPYG00000015950 | ||
Aliases: | None | ||
Description: | ribosomal protein S14 [Source:HGNC Symbol;Acc:10387] |
Percent Identity: | 57.94 % |
Parental protein coverage: | 82.12 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EKKEEQVISLGPQV-AEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGG-MKVKADRDESSPYAAM |
E..EEQ.IS.G.Q..AE..N.F.VCHIF..FNDT.VHV.D...K.TIC..TGG.MK.K.DR.E.SP...M | |
Retrocopy | EGNEEQLISFGFQG<AEVQNIFDVCHIFVPFNDTSVHVIDITDK*TICCMTGG<MKNKGDRNEFSP*TTM |
Parental | LAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIED |
LA...VAQ.CK.L.I.A.HI.L..TGGN..K.PGPGAQS.L.A.A..G...G.I.D | |
Retrocopy | LAIHNVAQKCKGLDIAAVHIILQTTGGNTAKIPGPGAQSVLSAFAH*GKETGQIKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 184 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 112 .24 RPM |
SRP007412_heart | 0 .00 RPM | 182 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 315 .29 RPM |
SRP007412_liver | 0 .00 RPM | 293 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3001 |
Pan troglodytes | retro_ptro_2030 |
Gorilla gorilla | retro_ggor_2080 |