RetrogeneDB ID: | retro_hsap_268 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:178380749..178381147(+) | ||
Located in intron of: | ENSG00000075391 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213058 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSG00000164587 | ||
Aliases: | RPS14, EMTB, S14 | ||
Description: | ribosomal protein S14 [Source:HGNC Symbol;Acc:10387] |
Percent Identity: | 83.82 % |
Parental protein coverage: | 87.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | QVAEGE-NVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKEL |
QVAEGE.NVFGVCHIFA.F.DTFVHVTDLSGKETICRVTGGMKVKADRDESSP.AA.LAAQDVAQRCKE. | |
Retrocopy | QVAEGE>NVFGVCHIFATFSDTFVHVTDLSGKETICRVTGGMKVKADRDESSPCAAFLAAQDVAQRCKEP |
Parental | GITALHIKLRATGGNRTKTPGPGA-QSALRALARSGMKIGRIEDVT-PIPS-DSTRRKGGRRGRRL |
GITALH.KL.ATGGNRTKTPGPGA.QSA.RALAR..MKI..IED.T.PIPS.D.T.RK.GR.G.RL | |
Retrocopy | GITALHVKLWATGGNRTKTPGPGA<QSAFRALARLSMKIRQIEDIT>PIPS>DGTHRKWGRCGHRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .18 RPM | 639 .89 RPM |
bodymap2_adrenal | 0 .06 RPM | 859 .94 RPM |
bodymap2_brain | 0 .05 RPM | 215 .93 RPM |
bodymap2_breast | 0 .02 RPM | 544 .48 RPM |
bodymap2_colon | 0 .02 RPM | 825 .31 RPM |
bodymap2_heart | 0 .07 RPM | 153 .10 RPM |
bodymap2_kidney | 0 .00 RPM | 313 .72 RPM |
bodymap2_liver | 0 .04 RPM | 140 .62 RPM |
bodymap2_lung | 0 .00 RPM | 540 .54 RPM |
bodymap2_lymph_node | 0 .35 RPM | 522 .77 RPM |
bodymap2_ovary | 0 .35 RPM | 754 .52 RPM |
bodymap2_prostate | 0 .00 RPM | 706 .05 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 380 .07 RPM |
bodymap2_testis | 0 .04 RPM | 469 .12 RPM |
bodymap2_thyroid | 0 .09 RPM | 478 .14 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 888 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_224 |
Gorilla gorilla | retro_ggor_316 |
Pongo abelii | retro_pabe_401 |
Macaca mulatta | retro_mmul_570 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 12 .03 RPM |
CEU_NA11930 | 8 .18 RPM |
CEU_NA12004 | 9 .53 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 17 .47 RPM |
CEU_NA12827 | 9 .58 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 5 .04 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 10 .79 RPM |
FIN_HG00321 | 9 .37 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 8 .34 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 9 .73 RPM |
FIN_HG00378 | 7 .93 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 11 .41 RPM |
GBR_HG00119 | 6 .15 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 8 .44 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 14 .52 RPM |
TSI_NA20532 | 8 .50 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 7 .92 RPM |
TSI_NA20771 | 7 .35 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 8 .76 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 9 .21 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 7 .58 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 6 .37 RPM |
YRI_NA19223 | 0 .00 RPM |