RetrogeneDB ID: | retro_mmul_1138 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:25450827..25451055(+) | ||
Located in intron of: | ENSMMUG00000007065 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.17369 | ||
Ensembl ID: | ENSMMUG00000005006 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S21 [Source:UniProtKB/TrEMBL;Acc:F7AM79] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 92.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | EFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLARAD |
.FV.LY...K.SASNRI..AKDHASIQMN.A.VDKV.GRFNGQFKTY..C.AI.RMGESDDSIL.L.... | |
Retrocopy | KFVNLYMQWK*SASNRIMDAKDHASIQMNLAKVDKVIGRFNGQFKTYTVCRAILRMGESDDSIL*LVKTN |
Parental | GIVSKNF |
.I.SKNF | |
Retrocopy | SI-SKNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 35 .30 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 149 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .06 RPM |
SRP007412_heart | 0 .00 RPM | 62 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 49 .76 RPM |
SRP007412_liver | 0 .00 RPM | 228 .60 RPM |
SRP007412_testis | 0 .00 RPM | 37 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4303 |
Gorilla gorilla | retro_ggor_2875 |
Pongo abelii | retro_pabe_3503 |
Callithrix jacchus | retro_cjac_629 |