Parental gene:

MMU.17369, ENSMMUG00000005006

Aliases:None
Description:40S ribosomal protein S21 [Source:UniProtKB/TrEMBL;Acc:F7AM79]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:10:2139063..2335330(-)


>ENSMMUG00000005006
ATGCAGAACGACGCCGGCGAGTTCGTGGACCTGTACGTGCCGCGGAAATGCTCCGCTAGCAACCGCATCATCGGTGCCAA
GGACCACGCATCCATCCAGATGAACGTTGGGATGTTGACAAGGTCACAGGCAGGTTTAATGGCCAGTTTAAAACTTATGC
TATCTGCGGGGCCATTCGTAGGATGGGTGAGTCAGATGATTCCATTCTTCGATTGGCCACGACGGCATCGTCTCAAAGAA
CTTTTGACTGGAGAGAATCATGGAAGTGGAATATTTGTCATAAATAAA

Library Parental gene expression (RPM)
SRP007412_brain 35 .30 RPM
SRP007412_brain_prefrontal_cortex 149 .85 RPM
SRP007412_cerebellum 33 .06 RPM
SRP007412_heart 62 .30 RPM
SRP007412_kidney 49 .76 RPM
SRP007412_liver 228 .60 RPM
SRP007412_testis 37 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017399 possible_ortholog 2 retrogenes
retro_amel_1783, retro_amel_87,
Bos taurus ENSBTAG00000020795 possible_ortholog 2 retrogenes
retro_btau_174, retro_btau_1780,
Canis familiaris ENSCAFG00000012676 possible_ortholog 4 retrogenes
retro_cfam_1055, retro_cfam_1687, retro_cfam_1896, retro_cfam_28,
Callithrix jacchus ENSCJAG00000014195 possible_ortholog 5 retrogenes
retro_cjac_2266, retro_cjac_2572, retro_cjac_629, retro_cjac_82, retro_cjac_884,
Erinaceus europaeus ENSEEUG00000004573 ortholog_one2one 2 retrogenes
retro_eeur_235, retro_eeur_501,
Gorilla gorilla ENSGGOG00000023745 ortholog_one2one 7 retrogenes
retro_ggor_131, retro_ggor_1380, retro_ggor_1647, retro_ggor_2043, retro_ggor_2089, retro_ggor_2875, retro_ggor_917,
Latimeria chalumnae ENSLACG00000012753 ortholog_one2many 1 retrogene
retro_lcha_124,
Loxodonta africana ENSLAFG00000015793 ortholog_one2one 4 retrogenes
retro_lafr_1055, retro_lafr_1237, retro_lafr_352, retro_lafr_499,
Macropus eugenii ENSMEUG00000015832 ortholog_one2one 2 retrogenes
retro_meug_1221, retro_meug_466,
Microcebus murinus ENSMICG00000012997 ortholog_one2one 5 retrogenes
retro_mmur_110, retro_mmur_1388, retro_mmur_264, retro_mmur_55, retro_mmur_965,
Ochotona princeps ENSOPRG00000000937 ortholog_one2one 1 retrogene
retro_opri_996,
Pongo abelii ENSPPYG00000011205 possible_ortholog 8 retrogenes
retro_pabe_1562, retro_pabe_157, retro_pabe_2446, retro_pabe_2505, retro_pabe_3503, retro_pabe_365, retro_pabe_710, retro_pabe_986,
Pan troglodytes ENSPTRG00000013708 possible_ortholog 1 retrogene
retro_ptro_42,
Pteropus vampyrus ENSPVAG00000003548 ortholog_one2one 2 retrogenes
retro_pvam_1362, retro_pvam_1368,
Rattus norvegicus ENSRNOG00000006325 possible_ortholog 2 retrogenes
retro_rnor_128, retro_rnor_172,
Sus scrofa ENSSSCG00000021825 possible_ortholog 1 retrogene
retro_sscr_7,
Ictidomys tridecemlineatus ENSSTOG00000001029 possible_ortholog 5 retrogenes
retro_itri_1027, retro_itri_1487, retro_itri_637, retro_itri_82, retro_itri_849,
Tarsius syrichta ENSTSYG00000007061 ortholog_one2one 5 retrogenes
retro_tsyr_105, retro_tsyr_123, retro_tsyr_1502, retro_tsyr_2157, retro_tsyr_951,
Tursiops truncatus ENSTTRG00000011105 ortholog_one2one 6 retrogenes
retro_ttru_1058, retro_ttru_1418, retro_ttru_1707, retro_ttru_1749, retro_ttru_1773, retro_ttru_674,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_588 65.71 84.34
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2. retro_mmul_633 67.11 90.36
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3. retro_mmul_1006 61.40 57.29
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4. retro_mmul_1043 66.33 100.00
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5. retro_mmul_1138 71.43 92.77
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6. retro_mmul_1279 69.23 61.45
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7. retro_mmul_1331 53.33 77.08
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8. retro_mmul_1948 71.08 100.00
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Download FASTA sequences of all ENSMMUG00000005006 retrocopies