Parental gene:

RPS21, ENSEEUG00000004573

Aliases:None
Description:ribosomal protein S21 [Source:HGNC Symbol;Acc:10409]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_7037:4..587(+)


>ENSEEUG00000004573
CAGAACGACGCCGGCGAGTTCGTGGACTTGTACGTTCCGCGCAAGTGCTCCGCCAGCAACCGCATTATCGGTGCCAAGGA
CCACGCGTCCATCCAGATGAACGCGGGCAGGTCGACAAGGCCGGCAGGTTCAACGGCCAGTATAGGACCTACGCGATCTG
TGGGACCATCCGCAAGATGGGCGAGTCGGACGACTCCATTCTACGACTGGCCAAGGTGGCATCGTCTCAAAGAATTTCTG
ACTGGGGGAAACCACTGTGGAGTATTTATAAATAAACAG

Library Parental gene expression (RPM)
SRP017611_liver 32 .96 RPM
SRP017611_kidney 41 .63 RPM
SRP017611_brain 16 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017399 possible_ortholog 2 retrogenes
retro_amel_1783, retro_amel_87,
Bos taurus ENSBTAG00000020795 possible_ortholog 2 retrogenes
retro_btau_174, retro_btau_1780,
Canis familiaris ENSCAFG00000012676 possible_ortholog 4 retrogenes
retro_cfam_1055, retro_cfam_1687, retro_cfam_1896, retro_cfam_28,
Callithrix jacchus ENSCJAG00000014195 possible_ortholog 5 retrogenes
retro_cjac_2266, retro_cjac_2572, retro_cjac_629, retro_cjac_82, retro_cjac_884,
Gorilla gorilla ENSGGOG00000023745 ortholog_one2one 7 retrogenes
retro_ggor_131, retro_ggor_1380, retro_ggor_1647, retro_ggor_2043, retro_ggor_2089, retro_ggor_2875, retro_ggor_917,
Latimeria chalumnae ENSLACG00000012753 ortholog_one2many 1 retrogene
retro_lcha_124,
Loxodonta africana ENSLAFG00000015793 ortholog_one2one 4 retrogenes
retro_lafr_1055, retro_lafr_1237, retro_lafr_352, retro_lafr_499,
Macropus eugenii ENSMEUG00000015832 ortholog_one2one 2 retrogenes
retro_meug_1221, retro_meug_466,
Microcebus murinus ENSMICG00000012997 ortholog_one2one 5 retrogenes
retro_mmur_110, retro_mmur_1388, retro_mmur_264, retro_mmur_55, retro_mmur_965,
Macaca mulatta ENSMMUG00000005006 ortholog_one2one 8 retrogenes
retro_mmul_1006, retro_mmul_1043, retro_mmul_1138, retro_mmul_1279, retro_mmul_1331, retro_mmul_1948, retro_mmul_588, retro_mmul_633,
Ochotona princeps ENSOPRG00000000937 ortholog_one2one 1 retrogene
retro_opri_996,
Pongo abelii ENSPPYG00000011205 possible_ortholog 8 retrogenes
retro_pabe_1562, retro_pabe_157, retro_pabe_2446, retro_pabe_2505, retro_pabe_3503, retro_pabe_365, retro_pabe_710, retro_pabe_986,
Pan troglodytes ENSPTRG00000013708 possible_ortholog 1 retrogene
retro_ptro_42,
Pteropus vampyrus ENSPVAG00000003548 ortholog_one2one 2 retrogenes
retro_pvam_1362, retro_pvam_1368,
Rattus norvegicus ENSRNOG00000006325 possible_ortholog 2 retrogenes
retro_rnor_128, retro_rnor_172,
Sus scrofa ENSSSCG00000021825 possible_ortholog 1 retrogene
retro_sscr_7,
Ictidomys tridecemlineatus ENSSTOG00000001029 possible_ortholog 5 retrogenes
retro_itri_1027, retro_itri_1487, retro_itri_637, retro_itri_82, retro_itri_849,
Tarsius syrichta ENSTSYG00000007061 ortholog_one2one 5 retrogenes
retro_tsyr_105, retro_tsyr_123, retro_tsyr_1502, retro_tsyr_2157, retro_tsyr_951,
Tursiops truncatus ENSTTRG00000011105 ortholog_one2one 6 retrogenes
retro_ttru_1058, retro_ttru_1418, retro_ttru_1707, retro_ttru_1749, retro_ttru_1773, retro_ttru_674,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_235 69.51 83.87
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2. retro_eeur_501 76.00 78.49
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Download FASTA sequences of all ENSEEUG00000004573 retrocopies