RetrogeneDB ID: | retro_mmul_1279 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 17:6744097..6744249(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.17369 | ||
Ensembl ID: | ENSMMUG00000005006 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S21 [Source:UniProtKB/TrEMBL;Acc:F7AM79] |
Percent Identity: | 69.23 % |
Parental protein coverage: | 61.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVA-EVDKVTGRFNGQFKT |
QN.A.EFVDLY.P...S.SN..IGAKDHAS.QMN.A.EV..VTGRFN..FKT | |
Retrocopy | QNNASEFVDLYTPWIRSTSNHVIGAKDHASMQMNMA<EVYQVTGRFNDPFKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 35 .30 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 149 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .06 RPM |
SRP007412_heart | 0 .00 RPM | 62 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 49 .76 RPM |
SRP007412_liver | 0 .00 RPM | 228 .60 RPM |
SRP007412_testis | 0 .00 RPM | 37 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1179 |
Gorilla gorilla | retro_ggor_917 |
Pongo abelii | retro_pabe_986 |
Callithrix jacchus | retro_cjac_2572 |