RetrogeneDB ID: | retro_mmul_1948 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:50834427..50834676(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.17369 | ||
Ensembl ID: | ENSMMUG00000005006 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S21 [Source:UniProtKB/TrEMBL;Acc:F7AM79] |
Percent Identity: | 71.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSIL |
MQN..GE.VDLY..RK..ASNRIIG.K.HASIQMNV.E.DKV.GRFNGQFKT.AIC..I.R.G.SDD.IL | |
Retrocopy | MQNYSGELVDLYMQRKGCASNRIIGVKNHASIQMNVVEADKVIGRFNGQFKTCAICEVIHRVGMSDDYIL |
Parental | RLARADGIVSKNF |
.LA.A.GI..KNF | |
Retrocopy | *LAKASGII*KNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 35 .30 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 149 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .06 RPM |
SRP007412_heart | 0 .00 RPM | 62 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 49 .76 RPM |
SRP007412_liver | 0 .04 RPM | 228 .60 RPM |
SRP007412_testis | 1 .39 RPM | 37 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2949 |
Gorilla gorilla | retro_ggor_2043 |
Pongo abelii | retro_pabe_2446 |
Callithrix jacchus | retro_cjac_2266 |