RetrogeneDB ID: | retro_mmus_2129 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:170463516..170463819(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000084067 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sumo1 | ||
Ensembl ID: | ENSMUSG00000026021 | ||
Aliases: | Sumo1, GMP1, PIC1, SENTRIN, SMT3, SMT3H3, SMTP3, SUMO-1, Smt3C, Ubl1 | ||
Description: | SMT3 suppressor of mif two 3 homolog 1 (yeast) [Source:MGI Symbol;Acc:MGI:1197010] |
Percent Identity: | 99.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQR |
MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQR | |
Retrocopy | MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQR |
Parental | IADNHTPKELGMEEEDVIEVYQEQTGGHSTV |
IADNHTPKELGME.EDVIEVYQEQTGGHSTV | |
Retrocopy | IADNHTPKELGMEKEDVIEVYQEQTGGHSTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .14 RPM | 24 .86 RPM |
SRP007412_cerebellum | 0 .04 RPM | 23 .27 RPM |
SRP007412_heart | 0 .06 RPM | 14 .60 RPM |
SRP007412_kidney | 0 .04 RPM | 20 .67 RPM |
SRP007412_liver | 0 .05 RPM | 12 .70 RPM |
SRP007412_testis | 0 .37 RPM | 24 .20 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_83902 | 655 libraries | 326 libraries | 87 libraries | 4 libraries | 0 libraries |