Parental gene:

ACTB, ENSCAFG00000016020

Aliases:ACTB, ACTA1
Description:Canis lupus familiaris actin, beta (ACTB), mRNA. [Source:RefSeq mRNA;Acc:NM_001195845]
Organism:Dog (Canis familiaris)
Coordinates:6:12421734..12424679(+)


>ENSCAFG00000016020
ATGGATGACGATATCGCTGCGCTTGTGGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCAGGCGACGACGCCCC
CCGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCCGGCACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCCTACG
TGGGCGATGAGGCCCAGAGCAAGAGGGGCATCCTGACCCTGAAGTACCCCATTGAGCACGGCATCGTCACCAACTGGGAC
GACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGCGTGGCCCCCGAGGAGCACCCGGTGCTGCTGACCGA
GGCCCCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAGATCATGTTCGAGACTTTCAACACCCCAGCCATGTACG
TGGCCATCCAGGCTGTGCTGTCCCTGTACGCCTCTGGCCGCACCACTGGCATCGTGATGGACTCCGGTGACGGGGTCACC
CACACGGTGCCCATCTATGAGGGGTACGCCCTCCCCCATGCCATCTTGCGTCTGGACCTGGCTGGCCGGGACCTGACCGA
CTACCTCATGAAGATCCTCACGGAGCGTGGCTACAGCTTCACCACCACCGCCGAGCGGGAAATCGTGCGTGACATCAAGG
AGAAGCTGTGTTATGTGGCCCTGGACTTCGAGCAGGAGATGGCCACCGCGGCCTCCAGCTCCTCCCTGGAGAAGAGCTAT
GAGCTGCCCGACGGGCAGGTCATCACTATTGGCAACGAGCGGTTCCGCTGCCCAGAGGCTCTCTTCCAGCCTTCCTTCCT
GGGCATGGAATCCTGCGGCATCCATGAAACTACCTTCAACTCCATCATGAAGTGTGACGTTGACATCCGCAAGGACCTCT
ATGCCAACACAGTGCTGTCTGGTGGAACCACCATGTACCCTGGCATCGCTGACAGGATGCAGAAGGAGATCACTGCCCTG
GCACCCAGCACAATGAAGATCAAGATCATCGCACCCCCTGAGCGCAAGTACTCTGTGTGGATTGGGGGCTCCATCCTGGC
CTCACTGTCCACCTTCCAGCAAATGTGGATCAGCAAGCAGGAGTACGACGAGTCCGGCCCCTCCATCGTCCACCGCAAAT
GCTTCTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 694 .45 RPM
SRP017611_brain 361 .16 RPM
SRP017611_kidney 277 .03 RPM
SRP017611_liver 263 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000010147 ortholog_one2one 1 retrogene
retro_apla_2,
Callithrix jacchus ENSCJAG00000000008 ortholog_one2one 2 retrogenes
retro_cjac_243, retro_cjac_56,
Dipodomys ordii ENSDORG00000010079 ortholog_one2one 1 retrogene
retro_dord_11,
Equus caballus ENSECAG00000015935 ortholog_one2one 2 retrogenes
retro_ecab_271, retro_ecab_994,
Felis catus ENSFCAG00000006788 ortholog_one2one 1 retrogene
retro_fcat_1613,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Macaca mulatta ENSMMUG00000011153 ortholog_one2many 1 retrogene
retro_mmul_135,
Otolemur garnettii ENSOGAG00000008348 possible_ortholog 1 retrogene
retro_ogar_2637,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pan troglodytes ENSPTRG00000018890 ortholog_one2one 27 retrogenes
retro_ptro_1042, retro_ptro_1051, retro_ptro_1076, retro_ptro_1143, retro_ptro_1272, retro_ptro_1515, retro_ptro_1756, retro_ptro_178, retro_ptro_2122, retro_ptro_2173, retro_ptro_2349, retro_ptro_2454, retro_ptro_263, retro_ptro_2805, retro_ptro_2854, retro_ptro_314, retro_ptro_3207, retro_ptro_3219, retro_ptro_3282, retro_ptro_3287, retro_ptro_3292, retro_ptro_3302, retro_ptro_3307, retro_ptro_387, retro_ptro_432, retro_ptro_53, retro_ptro_584,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_120 98.83 91.47
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2. retro_cfam_260 80.00 99.73
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3. retro_cfam_934 92.51 99.73
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Download FASTA sequences of all ENSCAFG00000016020 retrocopies