RetrogeneDB ID: | retro_cfam_120 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 3:63026641..63027736(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000015116 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSCAFG00000016020 | ||
Aliases: | ACTB, ACTA1 | ||
Description: | Canis lupus familiaris actin, beta (ACTB), mRNA. [Source:RefSeq mRNA;Acc:NM_001195845] |
Percent Identity: | 98.83 % |
Parental protein coverage: | 91.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP |
SIVGRPRH.GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL.VAPEEHP | |
Retrocopy | SIVGRPRHPGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAPEEHP |
Parental | VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALP |
VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDS.DGVTHTVPIYEGYALP | |
Retrocopy | VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSSDGVTHTVPIYEGYALP |
Parental | HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL |
HAILRLDLAGRDLTDYLMKILTERGYSFTT.AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL | |
Retrocopy | HAILRLDLAGRDLTDYLMKILTERGYSFTTIAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL |
Parental | PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR |
PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR | |
Retrocopy | PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR |
Parental | MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF | |
Retrocopy | MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 55 .98 RPM | 694 .45 RPM |
SRP017611_brain | 57 .80 RPM | 361 .16 RPM |
SRP017611_kidney | 43 .52 RPM | 277 .03 RPM |
SRP017611_liver | 34 .01 RPM | 263 .37 RPM |