Parental gene:

actb, ENSXETG00000025116

Aliases:None
Description:actin, beta [Source:Jamboree;Acc:XB-GENE-490883]
Organism:Xenopus (Xenopus tropicalis)
Coordinates:GL172638.1:956729..960934(-)


>ENSXETG00000025116
ATGGACGACGATATTGCTGCACTGGTCGTTGACAATGGTTCTGGTATGTGCAAAGCCGGCTTTGCAGGTGATGATGCACC
CCGTGCTGTTTTCCCATCCATTGTTGGTCGCCCAAGACATCAGGGTGTCATGGTTGGAATGGGACAGAAAGATAGCTACG
TAGGAGACGAAGCTCAAAGCAAAAGAGGTATTCTTACACTCAAATATCCTATTGAGCATGGCATTGTCACTAACTGGGAT
GATATGGAGAAGATCTGGCATCATACCTTCTACAATGAACTCAGAGTGGCCCCAGAGGAACACCCAGTGCTGCTGACAGA
AGCACCCTTGAATCCCAAAGCTAACCGGGAGAAAATGACGCAGATCATGTTTGAGACCTTTAACACTCCAGCTATGTATG
TTGCCATCCAAGCTGTGTTGTCCCTGTATGCATCTGGTCGTACCACTGGTATTGTCATGGACTCAGGTGATGGTGTAACA
CACACTGTGCCAATATATGAAGGTTATGCTCTACCCCATGCCATTCTGCGTCTGGACTTGGCTGGACGTGACCTGACAGA
CTACCTCATGAAAATCCTCACTGAGAGGGGGTACAGCTTCACCACCACAGCTGAAAGAGAAATTGTTCGTGATATCAAGG
AGAAATTGTGCTATGTTGCTCTGGACTTTGAGCAGGAGATGGCCACAGCTGCTTCTTCTTCATCATTGGAAAAGAGTTAT
GAGCTGCCTGATGGACAAGTTATCACCATTGGTAATGAGCGGTTTAGATGTCCAGAAGCACTCTTCCAGCCTTCTTTCCT
TGGTATGGAATCCTGTGGCATTCATGAAACCACTTACAACTCAATTATGAAGTGTGATGTAGATATCCGTAAGGACCTCT
ATGCCAATACTGTTCTCTCTGGTGGAACCACAATGTACCCTGGAATTGCTGATAGAATGCAGAAAGAAATAACTGCACTA
GCTCCCAGCACCATGAAAATCAAGATAATTGCTCCCCCTGAGCGTAAATACTCTGTCTGGATTGGCGGTTCCATCTTGGC
TTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGATGAGTCTGGGCCCTCAATAGTGCATCGTAAAT
GCTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain 1432 .32 RPM
SRP007412_skeletal_muscle 167 .37 RPM
SRP007412_heart 392 .88 RPM
SRP007412_kidney 392 .88 RPM
SRP007412_liver 735 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015238 possible_ortholog 3 retrogenes
retro_acar_176, retro_acar_199, retro_acar_7,
Ailuropoda melanoleuca ENSAMEG00000006601 possible_ortholog 1 retrogene
retro_amel_11,
Ailuropoda melanoleuca ENSAMEG00000016015 possible_ortholog 1 retrogene
retro_amel_929,
Anas platyrhynchos ENSAPLG00000010147 possible_ortholog 1 retrogene
retro_apla_2,
Bos taurus ENSBTAG00000006189 possible_ortholog 2 retrogenes
retro_btau_286, retro_btau_903,
Canis familiaris ENSCAFG00000016020 possible_ortholog 3 retrogenes
retro_cfam_120, retro_cfam_260, retro_cfam_934,
Callithrix jacchus ENSCJAG00000000008 possible_ortholog 2 retrogenes
retro_cjac_243, retro_cjac_56,
Callithrix jacchus ENSCJAG00000002885 possible_ortholog 3 retrogenes
retro_cjac_139, retro_cjac_336, retro_cjac_377,
Cavia porcellus ENSCPOG00000012101 possible_ortholog 1 retrogene
retro_cpor_361,
Cavia porcellus ENSCPOG00000013467 possible_ortholog 1 retrogene
retro_cpor_60,
Dipodomys ordii ENSDORG00000010079 possible_ortholog 1 retrogene
retro_dord_11,
Equus caballus ENSECAG00000015935 possible_ortholog 2 retrogenes
retro_ecab_271, retro_ecab_994,
Equus caballus ENSECAG00000018600 possible_ortholog 1 retrogene
retro_ecab_98,
Felis catus ENSFCAG00000006788 possible_ortholog 1 retrogene
retro_fcat_1613,
Felis catus ENSFCAG00000026434 possible_ortholog 2 retrogenes
retro_fcat_257, retro_fcat_377,
Homo sapiens ENSG00000075624 possible_ortholog 6 retrogenes
retro_hsap_1563, retro_hsap_1894, retro_hsap_3386, retro_hsap_38, retro_hsap_4204, retro_hsap_518,
Homo sapiens ENSG00000184009 possible_ortholog 10 retrogenes
retro_hsap_1548, retro_hsap_1607, retro_hsap_2405, retro_hsap_2591, retro_hsap_2605, retro_hsap_3466, retro_hsap_3631, retro_hsap_409, retro_hsap_4818, retro_hsap_4935,
Gallus gallus ENSGALG00000009621 possible_ortholog 1 retrogene
retro_ggal_4,
Gallus gallus ENSGALG00000028749 possible_ortholog 1 retrogene
retro_ggal_6,
Gorilla gorilla ENSGGOG00000001133 possible_ortholog 18 retrogenes
retro_ggor_1177, retro_ggor_1188, retro_ggor_1211, retro_ggor_1266, retro_ggor_1297, retro_ggor_1332, retro_ggor_1387, retro_ggor_1622, retro_ggor_1825, retro_ggor_1890, retro_ggor_2292, retro_ggor_2774, retro_ggor_2817, retro_ggor_3002, retro_ggor_352, retro_ggor_405, retro_ggor_44, retro_ggor_477,
Gorilla gorilla ENSGGOG00000014043 possible_ortholog 6 retrogenes
retro_ggor_1495, retro_ggor_2338, retro_ggor_2449, retro_ggor_273, retro_ggor_413, retro_ggor_520,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Macropus eugenii ENSMEUG00000016247 possible_ortholog 57 retrogenes
retro_meug_1006, retro_meug_1010, retro_meug_1018, retro_meug_1042, retro_meug_105, retro_meug_1085, retro_meug_1147, retro_meug_1186, retro_meug_1200, retro_meug_1230, retro_meug_1237, retro_meug_1380, retro_meug_1414, retro_meug_1437, retro_meug_1529, retro_meug_1534, retro_meug_1557, retro_meug_1588, retro_meug_1613, retro_meug_1624, retro_meug_1654, retro_meug_1656, retro_meug_1664, retro_meug_1669, retro_meug_1708, retro_meug_1716, retro_meug_1723, retro_meug_1753, retro_meug_1763, retro_meug_18, retro_meug_1935, retro_meug_1969, retro_meug_197, retro_meug_1982, retro_meug_1991, retro_meug_2100, retro_meug_2176, retro_meug_218, retro_meug_270, retro_meug_333, retro_meug_370, retro_meug_379, retro_meug_468, retro_meug_506, retro_meug_556, retro_meug_574, retro_meug_581, retro_meug_61, retro_meug_735, retro_meug_790, retro_meug_833, retro_meug_90, retro_meug_900, retro_meug_915, retro_meug_924, retro_meug_925, retro_meug_959,
Meleagris gallopavo ENSMGAG00000003960 possible_ortholog 2 retrogenes
retro_mgal_5, retro_mgal_6,
Microcebus murinus ENSMICG00000014863 possible_ortholog 3 retrogenes
retro_mmur_23, retro_mmur_352, retro_mmur_6,
Macaca mulatta ENSMMUG00000011153 possible_ortholog 1 retrogene
retro_mmul_135,
Monodelphis domestica ENSMODG00000002647 possible_ortholog 3 retrogenes
retro_mdom_187, retro_mdom_59, retro_mdom_89,
Mustela putorius furo ENSMPUG00000011610 possible_ortholog 1 retrogene
retro_mputfur_279,
Mustela putorius furo ENSMPUG00000016612 possible_ortholog 2 retrogenes
retro_mputfur_440, retro_mputfur_461,
Mus musculus ENSMUSG00000029580 possible_ortholog 7 retrogenes
retro_mmus_1613, retro_mmus_1677, retro_mmus_283, retro_mmus_2880, retro_mmus_3411, retro_mmus_3532, retro_mmus_761,
Mus musculus ENSMUSG00000062825 possible_ortholog 7 retrogenes
retro_mmus_1043, retro_mmus_1524, retro_mmus_2383, retro_mmus_3128, retro_mmus_3265, retro_mmus_3607, retro_mmus_3705,
Nomascus leucogenys ENSNLEG00000013385 possible_ortholog 15 retrogenes
retro_nleu_1008, retro_nleu_1058, retro_nleu_1059, retro_nleu_1150, retro_nleu_1347, retro_nleu_1474, retro_nleu_1729, retro_nleu_2193, retro_nleu_2393, retro_nleu_2574, retro_nleu_2669, retro_nleu_3032, retro_nleu_344, retro_nleu_813, retro_nleu_974,
Nomascus leucogenys ENSNLEG00000015506 possible_ortholog 3 retrogenes
retro_nleu_1525, retro_nleu_1536, retro_nleu_1930,
Ornithorhynchus anatinus ENSOANG00000007716 possible_ortholog 2 retrogenes
retro_oana_4, retro_oana_8,
Oryctolagus cuniculus ENSOCUG00000005867 possible_ortholog 1 retrogene
retro_ocun_720,
Otolemur garnettii ENSOGAG00000008040 possible_ortholog 3 retrogenes
retro_ogar_148, retro_ogar_1808, retro_ogar_2430,
Otolemur garnettii ENSOGAG00000008348 possible_ortholog 1 retrogene
retro_ogar_2637,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pongo abelii ENSPPYG00000008735 possible_ortholog 11 retrogenes
retro_pabe_1091, retro_pabe_1391, retro_pabe_1727, retro_pabe_2187, retro_pabe_2308, retro_pabe_2621, retro_pabe_2945, retro_pabe_3381, retro_pabe_3475, retro_pabe_3760, retro_pabe_600,
Pongo abelii ENSPPYG00000017336 possible_ortholog 23 retrogenes
retro_pabe_1281, retro_pabe_1292, retro_pabe_1575, retro_pabe_1610, retro_pabe_1772, retro_pabe_1816, retro_pabe_1911, retro_pabe_2042, retro_pabe_2168, retro_pabe_2175, retro_pabe_2188, retro_pabe_227, retro_pabe_2754, retro_pabe_2811, retro_pabe_2824, retro_pabe_2862, retro_pabe_2978, retro_pabe_309, retro_pabe_3563, retro_pabe_3567, retro_pabe_3746, retro_pabe_745, retro_pabe_86,
Pelodiscus sinensis ENSPSIG00000002102 possible_ortholog 2 retrogenes
retro_psin_25, retro_psin_4,
Pan troglodytes ENSPTRG00000018890 possible_ortholog 27 retrogenes
retro_ptro_1042, retro_ptro_1051, retro_ptro_1076, retro_ptro_1143, retro_ptro_1272, retro_ptro_1515, retro_ptro_1756, retro_ptro_178, retro_ptro_2122, retro_ptro_2173, retro_ptro_2349, retro_ptro_2454, retro_ptro_263, retro_ptro_2805, retro_ptro_2854, retro_ptro_314, retro_ptro_3207, retro_ptro_3219, retro_ptro_3282, retro_ptro_3287, retro_ptro_3292, retro_ptro_3302, retro_ptro_3307, retro_ptro_387, retro_ptro_432, retro_ptro_53, retro_ptro_584,
Rattus norvegicus ENSRNOG00000034254 possible_ortholog 10 retrogenes
retro_rnor_1324, retro_rnor_1386, retro_rnor_1799, retro_rnor_2371, retro_rnor_2714, retro_rnor_2856, retro_rnor_2978, retro_rnor_351, retro_rnor_459, retro_rnor_935,
Rattus norvegicus ENSRNOG00000036701 possible_ortholog 1 retrogene
retro_rnor_715,
Sorex araneus ENSSARG00000012197 possible_ortholog 1 retrogene
retro_sara_267,
Sarcophilus harrisii ENSSHAG00000012694 possible_ortholog 4 retrogenes
retro_shar_120, retro_shar_370, retro_shar_62, retro_shar_93,
Sus scrofa ENSSSCG00000007585 possible_ortholog 1 retrogene
retro_sscr_548,
Sus scrofa ENSSSCG00000028355 possible_ortholog 1 retrogene
retro_sscr_389,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Ictidomys tridecemlineatus ENSSTOG00000014797 possible_ortholog 3 retrogenes
retro_itri_149, retro_itri_1881, retro_itri_4,
Tupaia belangeri ENSTBEG00000010781 possible_ortholog 1 retrogene
retro_tbel_422,
Xenopus tropicalis ENSXETG00000021417 other_paralog 1 retrogene
retro_xtro_24,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_xtro_6 55.86 97.87
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Download FASTA sequences of all ENSXETG00000025116 retrocopies