RetrogeneDB ID: | retro_ecab_271 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 12:6868711..6869763(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000002481 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSECAG00000015935 | ||
Aliases: | None | ||
Description: | actin, cytoplasmic 1 [Source:RefSeq peptide;Acc:NP_001075307] |
Percent Identity: | 93.18 % |
Parental protein coverage: | 96.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL |
DAP..VF.SIVG.PRHQGVMVGMGQKDSYVGDEAQSKRG.LT.KYPIEHGIVTNWD.MEKIWHHTFYNEL | |
Retrocopy | DAPCTVFRSIVGHPRHQGVMVGMGQKDSYVGDEAQSKRGLLTPKYPIEHGIVTNWDGMEKIWHHTFYNEL |
Parental | RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVP |
.VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT.AMYVAIQAVLSLYASG.TTGIVMDSGDGVTHTVP | |
Retrocopy | CVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTLAMYVAIQAVLSLYASGCTTGIVMDSGDGVTHTVP |
Parental | IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSS |
IYEGYALPH.ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE.LCYVALDFEQEMAT.ASSS | |
Retrocopy | IYEGYALPHTILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKERLCYVALDFEQEMATVASSS |
Parental | SLEKSYELPDGQVITIGNERFRAPEALFQP-SFLGMESSGIHETTFNSIMKCDVDIRKDLYANTVLSGGT |
SLEKSYELP.GQVITIGN.RFRAPEALF...SFLGMESSGIHET.FNSIMKCDVDI.KDLYANTVLSGGT | |
Retrocopy | SLEKSYELPHGQVITIGNKRFRAPEALFHS<SFLGMESSGIHETAFNSIMKCDVDIHKDLYANTVLSGGT |
Parental | TMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK |
T.YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS.STFQQMWI.KQEY.ESGPSIVHRK | |
Retrocopy | TLYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASSSTFQQMWITKQEYNESGPSIVHRK |
Parental | CF |
CF | |
Retrocopy | CF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .59 RPM | 299 .28 RPM |
SRP021940_cerebellum | 1 .66 RPM | 493 .67 RPM |
SRP021940_embryo | 5 .93 RPM | 1174 .91 RPM |
SRP021940_placental_villous | 21 .89 RPM | 1350 .86 RPM |
SRP021940_synovial_membrane | 5 .11 RPM | 1075 .57 RPM |
SRP021940_testis | 2 .43 RPM | 313 .64 RPM |