RetrogeneDB ID: | retro_cfam_260 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:48492879..48493983(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSCAFG00000016020 | ||
Aliases: | ACTB, ACTA1 | ||
Description: | Canis lupus familiaris actin, beta (ACTB), mRNA. [Source:RefSeq mRNA;Acc:NM_001195845] |
Percent Identity: | 80. % |
Parental protein coverage: | 99.73 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | DDDIAALVVDNGSG-MCKAGFAGDDAP-RAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY |
...IAAL..D.GS..MC.AGFAGD.AP.RAVFPSI.GRP...G.MV.MGQKDSYVGDEA..K.GILTL.Y | |
Retrocopy | EEEIAAL--DSGSA<MCRAGFAGDGAP<RAVFPSIIGRPQP*GMMVSMGQKDSYVGDEALTKQGILTLRY |
Parental | PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV |
PIEH.IVTNWDD.EK.WHHTFYNEL.VA.EEHPVLLTEAP.NPKAN.EKMTQIMFETFNT.AMYVAI.AV | |
Retrocopy | PIEHDIVTNWDDVEKTWHHTFYNELHVASEEHPVLLTEAPPNPKANHEKMTQIMFETFNTSAMYVAI*AV |
Parental | LSLYASGRTTGIVMDSGDGVTHTV-PIYEGYALP-HAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE |
LSLYASGRTTGIVMDSGDG.THT..P...G...P.HA.LRLDLAGR.L...LM.ILTERGYSFTT.AE.E | |
Retrocopy | LSLYASGRTTGIVMDSGDGITHTA<PSTRGTPRP<HAVLRLDLAGRGLAHHLMTILTERGYSFTTAAEQE |
Parental | IVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQ-PSFLGMESCGIHE |
IVRDIKEKLC.VALDFEQE.ATAASSSSLEKS.ELP.GQVIT....RF.CPE.LFQ..SF.G.ESCGIHE | |
Retrocopy | IVRDIKEKLCCVALDFEQEVATAASSSSLEKS*ELPEGQVITV--QRFCCPEVLFQ<ASFPGVESCGIHE |
Parental | TTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL |
TTFNSI.KCDV.I..DLYANTVLSGGTTMYPGIAD.MQK.ITALAPSTMKIKIIAPP.RKYS.WIGGS.L | |
Retrocopy | TTFNSIVKCDVAIWEDLYANTVLSGGTTMYPGIADGMQKGITALAPSTMKIKIIAPPKRKYSAWIGGSRL |
Parental | ASLSTFQQMWI-SKQEYDESGPSIVHRKCF |
ASLSTFQQ.W...KQEYDESGPSIVH.KCF | |
Retrocopy | ASLSTFQQVWL<QKQEYDESGPSIVHCKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .21 RPM | 694 .45 RPM |
SRP017611_brain | 0 .95 RPM | 361 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 277 .03 RPM |
SRP017611_liver | 0 .00 RPM | 263 .37 RPM |