RetrogeneDB ID: | retro_ecab_994 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 8:42982118..42982720(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSECAG00000015935 | ||
Aliases: | None | ||
Description: | actin, cytoplasmic 1 [Source:RefSeq peptide;Acc:NP_001075307] |
Percent Identity: | 63.51 % |
Parental protein coverage: | 56.99 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | VDNGSGMCKGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI-VTNW |
..NGSGMCK..AG.....A..P..V..P.HQG.MVGMGQ..SY.G..A.SK..I.TLK.P.E....VTN. | |
Retrocopy | IHNGSGMCK--AGFSGDDAPQPCWV--PWHQGIMVGMGQ-ESYMGGNAPSKHSIQTLKSPMEQTL<VTNS |
Parental | DDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT |
DDM.KIWH...YNEL..VA.E.H..LLTEA.LN.KANREKMT.IM.ETFNT.A.YVAI.A.L.LYASG.. | |
Retrocopy | DDMGKIWH--LYNELH>VALEGHADLLTEAFLNLKANREKMT*IMSETFNTRALYVAI*AMLALYASGYP |
Parental | TGIVMDSGDGVTHTVPI-YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC |
TGIV.D..DGVTH.VPI...GYALPH.IL..DLA...L.D.LMKILTE.GYSFTT.....IV.DIK.KLC | |
Retrocopy | TGIVTDPRDGVTHMVPI<HQGYALPHTILSRDLASWYLID*LMKILTESGYSFTTPTKGKIVSDIKGKLC |
Parental | Y |
Y | |
Retrocopy | Y |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 299 .28 RPM |
SRP021940_cerebellum | 0 .05 RPM | 493 .67 RPM |
SRP021940_embryo | 0 .10 RPM | 1174 .91 RPM |
SRP021940_placental_villous | 0 .00 RPM | 1350 .86 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 1075 .57 RPM |
SRP021940_testis | 0 .06 RPM | 313 .64 RPM |