RetrogeneDB ID: | retro_cfam_934 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:44514785..44515907(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000006961 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSCAFG00000016020 | ||
Aliases: | ACTB, ACTA1 | ||
Description: | Canis lupus familiaris actin, beta (ACTB), mRNA. [Source:RefSeq mRNA;Acc:NM_001195845] |
Percent Identity: | 92.51 % |
Parental protein coverage: | 99.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
DD...ALVVDNGSGMCKAGF.GDDAPRAVFPS.VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYPI | |
Retrocopy | DDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYPI |
Parental | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
EHG.VTNWDDMEKIWHHTFYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVLS | |
Retrocopy | EHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLS |
Parental | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY.FTTTAEREIVRD | |
Retrocopy | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVRD |
Parental | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNS |
.KEKLCYVALDFEQEM..AA.SSSLE.SYELPDGQVIT.GNERFRCPE..FQPSFLG.ES.GIHETTFNS | |
Retrocopy | VKEKLCYVALDFEQEMGSAAASSSLERSYELPDGQVITLGNERFRCPESIFQPSFLGIESSGIHETTFNS |
Parental | IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
IMKCDVDIRKDLYAN.VLSGG.TMYPGIADRMQKEI..LAPSTMKIKIIAPPERKYSVWIGGSILASLST | |
Retrocopy | IMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIMTLAPSTMKIKIIAPPERKYSVWIGGSILASLST |
Parental | FQQMWISKQEYDESGPSIVHRKCF |
FQQMWISKQEYDE.GP.IVHRKCF | |
Retrocopy | FQQMWISKQEYDEAGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 694 .45 RPM |
SRP017611_brain | 0 .00 RPM | 361 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 277 .03 RPM |
SRP017611_liver | 0 .00 RPM | 263 .37 RPM |