RetrogeneDB ID: | retro_ptro_387 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:203179009..203179752(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPTRG00000018890 | ||
Aliases: | ACTB, beta-actin | ||
Description: | Pan troglodytes actin, beta (ACTB), mRNA. [Source:RefSeq mRNA;Acc:NM_001009945] |
Percent Identity: | 87.55 % |
Parental protein coverage: | 66.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
MDDDIAALV.DN.SGMCKAGF.GDD.P.A.FPS.VGRPRH.GVMV.MGQKDSYVGDEAQSKRGILTLKYP | |
Retrocopy | MDDDIAALVIDNSSGMCKAGFTGDDDPWAIFPSMVGRPRHRGVMVSMGQKDSYVGDEAQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP-LNPKANREKMTQIMFETFNTPAMYVAIQAV |
IEHGIVTNWDDMEKIWHH.F.NELRVAPE.HPVLLT.AP.LNPKANREKMTQIMFETFNT.AMYVAIQA. | |
Retrocopy | IEHGIVTNWDDMEKIWHHIFHNELRVAPEQHPVLLTKAP<LNPKANREKMTQIMFETFNTAAMYVAIQAL |
Parental | LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV |
LSLYASGRTTGI.MDSGD.VTHTVP.Y.GYALPHAI..LDLAGRDLTDYLMKILTERGYSFTTTAE.EIV | |
Retrocopy | LSLYASGRTTGIMMDSGDEVTHTVPFYGGYALPHAIMCLDLAGRDLTDYLMKILTERGYSFTTTAEQEIV |
Parental | RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVI |
.DIKEK.CY.ALDFEQEMAT.ASSS.LEKSY.L.D.QVI | |
Retrocopy | HDIKEKPCYIALDFEQEMATGASSSFLEKSYKLHDSQVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .07 RPM | 1976 .36 RPM |
SRP007412_cerebellum | 6 .92 RPM | 1129 .84 RPM |
SRP007412_heart | 1 .49 RPM | 382 .11 RPM |
SRP007412_kidney | 2 .33 RPM | 1474 .96 RPM |
SRP007412_liver | 6 .91 RPM | 1774 .09 RPM |
SRP007412_testis | 0 .00 RPM | 315 .31 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_477 |
Pongo abelii | retro_pabe_227 |