RetrogeneDB ID: | retro_cjac_243 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:150155163..150156294(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000023067 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSCJAG00000000008 | ||
Aliases: | None | ||
Description: | actin, beta [Source:HGNC Symbol;Acc:132] |
Percent Identity: | 91.71 % |
Parental protein coverage: | 99.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
DD...ALVVDNGSGMCKAGF.GDDAPRAVFPS..GRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYPI | |
Retrocopy | DDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMIGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYPI |
Parental | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
EHG.VTNWDDMEKIW.HTFYNELRVAP..HP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVLS | |
Retrocopy | EHGVVTNWDDMEKIWYHTFYNELRVAPDDHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLS |
Parental | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY.FTTTAEREIVRD | |
Retrocopy | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVRD |
Parental | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNS |
.KEKLCYVALDFEQEM.....SSSLE.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHETTFNS | |
Retrocopy | VKEKLCYVALDFEQEMVSSVASSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNS |
Parental | IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
IMKCDVDIRKDLYANTVLSGG.TMYPGIADRMQKEI..LAPS.MKIKIIAPPERKYSVWIGGSILASLST | |
Retrocopy | IMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIITLAPSNMKIKIIAPPERKYSVWIGGSILASLST |
Parental | FQQMWISKQEYDESGPSIVHRKCF |
FQQMWISKQEYDE.GP.IVHRKCF | |
Retrocopy | FQQMWISKQEYDEAGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 474 .83 RPM |
SRP051959_heart | 0 .00 RPM | 206 .24 RPM |
SRP051959_kidney | 0 .00 RPM | 218 .20 RPM |
SRP051959_liver | 0 .00 RPM | 80 .30 RPM |
SRP051959_lung | 0 .00 RPM | 291 .63 RPM |
SRP051959_lymph_node | 0 .00 RPM | 413 .82 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 85 .32 RPM |
SRP051959_spleen | 0 .00 RPM | 347 .02 RPM |