RetrogeneDB ID: | retro_ptro_263 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:217237546..217238315(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPTRG00000018890 | ||
Aliases: | ACTB, beta-actin | ||
Description: | Pan troglodytes actin, beta (ACTB), mRNA. [Source:RefSeq mRNA;Acc:NM_001009945] |
Percent Identity: | 83.78 % |
Parental protein coverage: | 68.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK-RGILTLKY |
M...IA.L..DNGS.MCKAGFAGDDAP.AVFPSI.G.PRH..VMVGMGQKDSYVGD.AQSK..GILTLKY | |
Retrocopy | MEEEIATLAIDNGSSMCKAGFAGDDAPQAVFPSIIGHPRHKSVMVGMGQKDSYVGDKAQSK<AGILTLKY |
Parental | PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV |
PIEHGIVTNWDDMEKIW.HTFYNEL.VA.EEHPVLL.EA..NPKANREKMTQIMFETFNTPAMYVAIQ.V | |
Retrocopy | PIEHGIVTNWDDMEKIWDHTFYNELCVALEEHPVLLIEACPNPKANREKMTQIMFETFNTPAMYVAIQPV |
Parental | LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV |
LSLYASGRT.GIV.DSGDGVTHTVPIY.GYALPHAIL.LDLAGRDLT.YLMKILTERGYSFTT.A.REI. | |
Retrocopy | LSLYASGRTSGIVRDSGDGVTHTVPIYVGYALPHAILHLDLAGRDLTGYLMKILTERGYSFTTSAQREIM |
Parental | RDIKEKLCYVALDFEQEMATAASSSSLEKS-YELPDGQVITIGNERFRC |
..I.EKLCY..LDFE.EMATAASSSSLEKS..ELP.GQVITIGN...RC | |
Retrocopy | PHIREKLCYITLDFEKEMATAASSSSLEKS<LELPNGQVITIGNKPSRC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .16 RPM | 1976 .36 RPM |
SRP007412_cerebellum | 11 .58 RPM | 1129 .84 RPM |
SRP007412_heart | 2 .33 RPM | 382 .11 RPM |
SRP007412_kidney | 19 .46 RPM | 1474 .96 RPM |
SRP007412_liver | 13 .39 RPM | 1774 .09 RPM |
SRP007412_testis | 10 .43 RPM | 315 .31 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_352 |