Parental gene:

UBXN2A, ENSCJAG00000007665

Aliases:None
Description:UBX domain protein 2A [Source:HGNC Symbol;Acc:27265]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:84572271..84609038(-)


>ENSCJAG00000007665
ATGAAAGACGTAGATAACCTCAAAAGTATAAAAGAAGAATGGGTTTGTGAGGCAGGATCTGATAATCAACCTCTTGGTAA
TAATCAACAATCAAATTGTGAATATTTTGTTGATAGCCTTTTTGAGGAAGCTCAAAAGGTTGGTTCCAAATGCGTGTCTT
CCACTGAACAAAAGAAACAGGTAGATGTAAATATAAAATTATGGAAAAATGGATTCACTGTCAATGATGATTTCAGAAGT
TATTCTGATGGTGCAAGTCAACAGTTTTTGAACTCCATCAAAAAGGGGGAATTACCTTCAGAATTACAGAGAATTTTTGA
TAAAGAAGAGGTGGATGTTAAAGTTGAAGACAAGAAAAATGAAGTATGTATGTCTACAAAGCCTGTGTTCCAGCCCTTTT
CAGGACAGGGTCACAGACTAGGAAGTGCCACACCAAAAATTGTTTCTAAAGCAAAGAGTATTGAAGTTGAAAATAAAAAT
AATTTGTCTGCTGTTCTGCTGAACAACTTGGAACCTGTTACTAATATACAGATCTGGTTAGCCAACGGGAAAAGGATTGT
CCAGAAATTTAACGTCTCTCATAGAGTAAGCCATATCAAAGACTTCATTGAAAAATACCAAGGATCTCAAAGAAGTCCTC
CATTTTTCCTGGCAACAGCTCTTCCTGTCCTCAGATTGCTAGATGAGACACTCACACTGGAAGAAGCAGACTTACAGAAT
GCTGTCATCATTCAGAGACTCCAAAAAACTGCTGCACCTTTTAGAGAACTTTCAGAACATTGA

Library Parental gene expression (RPM)
SRP051959_spleen 6 .85 RPM
SRP051959_skeletal_muscle 15 .77 RPM
SRP051959_lymph_node 9 .95 RPM
SRP051959_lung 10 .36 RPM
SRP051959_liver 2 .23 RPM
SRP051959_kidney 6 .32 RPM
SRP051959_heart 8 .66 RPM
SRP051959_colon 6 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001640 ortholog_one2one 5 retrogenes
retro_chof_1096, retro_chof_1171, retro_chof_2641, retro_chof_961, retro_chof_964,
Equus caballus ENSECAG00000020144 ortholog_one2one 1 retrogene
retro_ecab_569,
Echinops telfairi ENSETEG00000002623 ortholog_one2one 1 retrogene
retro_etel_1116,
Homo sapiens ENSG00000173960 ortholog_one2one 1 retrogene
retro_hsap_2025,
Gorilla gorilla ENSGGOG00000002445 ortholog_one2one 1 retrogene
retro_ggor_1463,
Myotis lucifugus ENSMLUG00000015640 ortholog_one2one 1 retrogene
retro_mluc_1195,
Macaca mulatta ENSMMUG00000006487 ortholog_one2one 1 retrogene
retro_mmul_2068,
Mus musculus ENSMUSG00000020634 ortholog_one2one 1 retrogene
retro_mmus_1007,
Nomascus leucogenys ENSNLEG00000000751 ortholog_one2one 1 retrogene
retro_nleu_2612,
Oryctolagus cuniculus ENSOCUG00000008783 ortholog_one2many 1 retrogene
retro_ocun_207,
Otolemur garnettii ENSOGAG00000000025 ortholog_one2one 1 retrogene
retro_ogar_1909,
Procavia capensis ENSPCAG00000011502 ortholog_one2one 4 retrogenes
retro_pcap_169, retro_pcap_255, retro_pcap_271, retro_pcap_323,
Pan troglodytes ENSPTRG00000011705 ortholog_one2one 1 retrogene
retro_ptro_1347,
Rattus norvegicus ENSRNOG00000004950 ortholog_one2one 2 retrogenes
retro_rnor_1746, retro_rnor_2966,
Sorex araneus ENSSARG00000010108 ortholog_one2one 1 retrogene
retro_sara_272,
Sus scrofa ENSSSCG00000026283 ortholog_one2one 1 retrogene
retro_sscr_537,
Tupaia belangeri ENSTBEG00000012158 ortholog_one2one 1 retrogene
retro_tbel_3887,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2085 72.99 64.25
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Download FASTA sequences of all ENSCJAG00000007665 retrocopies