Parental gene:

UBXN2A, ENSPTRG00000011705

Aliases:UBXN2A, UBXD4
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2A:24254538..24315204(+)


>ENSPTRG00000011705
ATGAAAGACGTAGATAACCTCAAAAGTATAAAAGAAGAATGGGTTTGTGAAACAGGATCTGATAATCAACCTCTTGGTAA
TAATCAACAATCAAATTGTGAATATTTTGTTGATAGCCTTTTTGAGGAAGCTCAGAAGGTTAGTTCCAAATGTGTGTCTC
CCGCTGAACAGAAGAAACAGGTAGATGTAAATATAAAATTATGGAAAAATGGATTCACCGTCAACAACGATTTCAGAAGT
TATTCCGATGGTGCCAGTCAGCAGTTTTTGAACTCCATCAAAAAGGGGGAATTACCTTCAGAATTACAGGGAATTTTTGA
TAAAGAAGAGGTGGACGTTAAAGTTGAAGACAAGAAAAATGAAATATGTTTGTCTACGAAGCCTGTGTTCCAGCCCTTTT
CAGGACAGGGTCACAGACTAGGAAGTGCCACACCAAAAATTGTTTCTAAAGCAAAGAATATTGAAATTGAAAATAAAAAT
AATTTGTCTGCTGTTCCACTGAACAACTTGGAACCCATTACTAATATACAGATCTGGTTGGCCAATGGAAAAAGGATTGT
CCAGAAATTTAACATTTCTCATAGAGTAAGCCATATCAAAGACTTCATTGAAAAATACCAAGGATCTCAAAGAAGTCCTC
CGTTTTCCCTGGCAACAGCTCTTCCTGTCCTCAGGTTGCTAGATGAGACACTCACACTGGAAGAAGCAGATTTACAGAAT
GCTGTCATCATTCAGAGACTCCAAAAAACTGCATCTTTTAGAGAACTTTCAGAGCACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1 .64 RPM
SRP007412_cerebellum 3 .48 RPM
SRP007412_heart 6 .09 RPM
SRP007412_kidney 3 .69 RPM
SRP007412_liver 2 .42 RPM
SRP007412_testis 3 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001640 ortholog_one2one 5 retrogenes
retro_chof_1096, retro_chof_1171, retro_chof_2641, retro_chof_961, retro_chof_964,
Callithrix jacchus ENSCJAG00000007665 ortholog_one2one 1 retrogene
retro_cjac_2085,
Equus caballus ENSECAG00000020144 ortholog_one2one 1 retrogene
retro_ecab_569,
Echinops telfairi ENSETEG00000002623 ortholog_one2one 1 retrogene
retro_etel_1116,
Homo sapiens ENSG00000173960 ortholog_one2one 1 retrogene
retro_hsap_2025,
Gorilla gorilla ENSGGOG00000002445 ortholog_one2one 1 retrogene
retro_ggor_1463,
Myotis lucifugus ENSMLUG00000015640 ortholog_one2one 1 retrogene
retro_mluc_1195,
Macaca mulatta ENSMMUG00000006487 ortholog_one2one 1 retrogene
retro_mmul_2068,
Mus musculus ENSMUSG00000020634 ortholog_one2one 1 retrogene
retro_mmus_1007,
Nomascus leucogenys ENSNLEG00000000751 ortholog_one2one 1 retrogene
retro_nleu_2612,
Oryctolagus cuniculus ENSOCUG00000008783 ortholog_one2many 1 retrogene
retro_ocun_207,
Otolemur garnettii ENSOGAG00000000025 ortholog_one2one 1 retrogene
retro_ogar_1909,
Procavia capensis ENSPCAG00000011502 ortholog_one2one 4 retrogenes
retro_pcap_169, retro_pcap_255, retro_pcap_271, retro_pcap_323,
Pan troglodytes ENSPTRG00000013164 within_species_paralog 1 retrogene
retro_ptro_2745,
Pan troglodytes ENSPTRG00000033886 within_species_paralog 1 retrogene
retro_ptro_2668,
Rattus norvegicus ENSRNOG00000004950 ortholog_one2one 2 retrogenes
retro_rnor_1746, retro_rnor_2966,
Sorex araneus ENSSARG00000010108 ortholog_one2one 1 retrogene
retro_sara_272,
Sus scrofa ENSSSCG00000026283 ortholog_one2one 1 retrogene
retro_sscr_537,
Tupaia belangeri ENSTBEG00000012158 ortholog_one2one 1 retrogene
retro_tbel_3887,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1347 74.29 54.05
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Download FASTA sequences of all ENSPTRG00000011705 retrocopies