Parental gene:

UBXN2A, ENSSSCG00000026283

Aliases:None
Description:UBX domain protein 2A [Source:HGNC Symbol;Acc:27265]
Organism:Pig (Sus scrofa)
Coordinates:3:121943290..121959714(-)


>ENSSSCG00000026283
CTGAGATCTTATTTTAGAAGTGGGTCTCAACTGCACACATGGAGGGTTTGTGAAACAGGATCTGACCACCAACCTCTTAG
TGATAATCAACAAATCAATTGTGAATATTTCGTTGATAGCCTTTTTGAGGAAGCTCAGAAGGTTGGTGCCAAATCCTTGT
CTCCCACTGAACAAAAGAAACAGGTAGATGTAAGTATAAAATTATGGAAAAATGGATTCACAGTCAATGATGATTTTAGA
AGTTATTCTGATGGTGCAAGTCAGCAGTTTCTGAACTCCATCAAAAAAGGGGAATTACCTTTAGAATTACAAGGAGTTTT
TGATAAAGAGGAGGTGGATGTTAGAGTTGAAGATAAGAAAAATGAAGTGTGTATGTCAACGAAGCCTGTGTTCCAGCCCT
TCTCAGGACAGGGTCACAGACTGGGAAGTGCCACACCAAAAATTGTTTCTAAAGCAAAGAGTATTGAAGTTGAGAATAAA
AATAAGTTGTCTACTGTCCCGCTAAACAATCTGGAACCCATCACTAATGTACAGATCTGGTTAGCCAATGGGAAAAGGAT
TGTCCAGAAATTTAACATTTCTCATAGGATAAGCCACATCAAAGACTTCATCGAAAAATACCAAGGACCTCAAAGAAGTC
CTCCCTTTTCCTTGGCAACAGCTCTTCCTTTCCTCAAATTGCTAGATGAAACACTCACACTGGAAGAAGCAGATTTACAG
AATGCTGTAATCATTCAGAGACTCAAAAAAACCGCTGAACCTTTTAAAGAACTTTCATAA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .80 RPM
SRP014902_testis 2 .97 RPM
SRP018856_adipose 2 .52 RPM
SRP018288_kidney 4 .93 RPM
SRP018288_lung 6 .82 RPM
SRP018288_liver 1 .76 RPM
SRP018288_heart 8 .36 RPM
SRP035408_liver 2 .41 RPM
SRP035408_brain 2 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001640 ortholog_one2one 5 retrogenes
retro_chof_1096, retro_chof_1171, retro_chof_2641, retro_chof_961, retro_chof_964,
Callithrix jacchus ENSCJAG00000007665 ortholog_one2one 1 retrogene
retro_cjac_2085,
Equus caballus ENSECAG00000020144 ortholog_one2one 1 retrogene
retro_ecab_569,
Echinops telfairi ENSETEG00000002623 ortholog_one2one 1 retrogene
retro_etel_1116,
Homo sapiens ENSG00000173960 ortholog_one2one 1 retrogene
retro_hsap_2025,
Gorilla gorilla ENSGGOG00000002445 ortholog_one2one 1 retrogene
retro_ggor_1463,
Myotis lucifugus ENSMLUG00000015640 ortholog_one2one 1 retrogene
retro_mluc_1195,
Macaca mulatta ENSMMUG00000006487 ortholog_one2one 1 retrogene
retro_mmul_2068,
Mus musculus ENSMUSG00000020634 ortholog_one2one 1 retrogene
retro_mmus_1007,
Nomascus leucogenys ENSNLEG00000000751 ortholog_one2one 1 retrogene
retro_nleu_2612,
Oryctolagus cuniculus ENSOCUG00000008783 ortholog_one2many 1 retrogene
retro_ocun_207,
Otolemur garnettii ENSOGAG00000000025 ortholog_one2one 1 retrogene
retro_ogar_1909,
Procavia capensis ENSPCAG00000011502 ortholog_one2one 4 retrogenes
retro_pcap_169, retro_pcap_255, retro_pcap_271, retro_pcap_323,
Pan troglodytes ENSPTRG00000011705 ortholog_one2one 1 retrogene
retro_ptro_1347,
Rattus norvegicus ENSRNOG00000004950 ortholog_one2one 2 retrogenes
retro_rnor_1746, retro_rnor_2966,
Sorex araneus ENSSARG00000010108 ortholog_one2one 1 retrogene
retro_sara_272,
Tupaia belangeri ENSTBEG00000012158 ortholog_one2one 1 retrogene
retro_tbel_3887,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_537 51.38 69.26
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Download FASTA sequences of all ENSSSCG00000026283 retrocopies