RetrogeneDB ID: | retro_chof_1171 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_218184:570..1175(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBXN2A | ||
Ensembl ID: | ENSCHOG00000001640 | ||
Aliases: | None | ||
Description: | UBX domain protein 2A [Source:HGNC Symbol;Acc:27265] |
Percent Identity: | 80. % |
Parental protein coverage: | 78.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | TEEKKQVDVSITLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPLELQGIFDKEELDVKVEDKKNEICV |
T..KK....SITLWKNGFTVNDD..SYSDGA.QQFL.SI.K.EL.LELQGIFD.E.LDV..ED.KN.IC. | |
Retrocopy | TH*KKETGASITLWKNGFTVNDDIISYSDGARQQFLKSI*KRELSLELQGIFDEEALDV--EDEKNIICM |
Parental | STKPVFQPFSGQGHRLGSATPKIISKAKSIEVKNKNNMSAVPLNNLEPITNIQIWLANGKRVIQKFNISH |
STKPVFQPF.GQ.HRLGSATPKIIS.AKSIEVKNKNNMSAVPLNNLEPITN..IWLANGKR..QKF.ISH | |
Retrocopy | STKPVFQPFAGQSHRLGSATPKIISEAKSIEVKNKNNMSAVPLNNLEPITNVHIWLANGKRSVQKFSISH |
Parental | RVSHIKDFIEKYQGSQRSPPFSLATALP-FLKLLDETLTLEEADLQNAVIIQRLQKAADPCRGLS |
RVSHIK.FIEKYQ.SQRSPPFS..TALP.F..LLDETLTLEEADLQNAV..QR..KAA.P.RGLS | |
Retrocopy | RVSHIKVFIEKYQESQRSPPFSFTTALP<FPQLLDETLTLEEADLQNAVNFQRP*KAAEPFRGLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001640 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007665 | 1 retrocopy | |
Equus caballus | ENSECAG00000020144 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002623 | 1 retrocopy | |
Homo sapiens | ENSG00000173960 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002445 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015640 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006487 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020634 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000751 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008783 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000025 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011502 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000011705 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004950 | 2 retrocopies | |
Sorex araneus | ENSSARG00000010108 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026283 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012158 | 1 retrocopy |