Parental gene:

UBXN2A, ENSG00000173960

Aliases:None
Description:UBX domain protein 2A [Source:HGNC Symbol;Acc:27265]
Organism:Human (Homo sapiens)
Coordinates:2:24150154..24227779(+)


>ENSG00000173960
ATGAAAGACGTAGATAACCTCAAAAGTATAAAAGAAGAATGGGTTTGTGAAACAGGATCTGATAATCAACCTCTTGGTAA
TAATCAACAATCAAATTGTGAATATTTTGTTGATAGCCTTTTTGAGGAAGCTCAGAAGGTTAGTTCCAAATGTGTGTCTC
CCGCTGAACAGAAGAAACAGGTAGATGTAAATATAAAATTATGGAAAAACGGATTCACCGTCAACGACGATTTCAGAAGT
TATTCCGATGGTGCCAGTCAGCAGTTTTTGAACTCCATCAAAAAGGGGGAATTACCTTCAGAATTACAGGGAATTTTTGA
TAAAGAAGAGGTGGACGTTAAAGTTGAAGACAAGAAAAATGAAATATGTTTGTCTACGAAGCCTGTGTTCCAGCCCTTTT
CAGGACAGGGTCACAGACTAGGAAGTGCCACACCAAAAATTGTTTCTAAAGCAAAGAATATTGAAGTTGAAAATAAAAAT
AATTTGTCTGCTGTTCCACTGAACAACTTGGAACCCATTACTAATATACAGATCTGGTTGGCCAATGGAAAAAGGATTGT
CCAGAAATTTAACATTACTCATAGAGTAAGCCATATCAAAGACTTCATTGAAAAATACCAAGGATCTCAAAGAAGTCCTC
CGTTTTCCCTGGCAACAGCTCTTCCTGTCCTCAGGTTGCTAGATGAGACACTCACACTGGAAGAAGCAGATTTACAGAAT
GCTGTCATCATTCAGAGACTCCAAAAAACTGCATCTTTTAGAGAACTTTCAGAGCACTGA

Library Parental gene expression (RPM)
bodymap2_liver 9 .61 RPM
bodymap2_lung 21 .82 RPM
bodymap2_breast 32 .28 RPM
bodymap2_adipose 24 .19 RPM
bodymap2_adrenal 26 .36 RPM
bodymap2_skeletal_muscle 34 .14 RPM
bodymap2_thyroid 27 .23 RPM
bodymap2_prostate 32 .60 RPM
bodymap2_colon 33 .59 RPM
bodymap2_testis 26 .07 RPM
bodymap2_brain 17 .49 RPM
bodymap2_heart 35 .87 RPM
bodymap2_white_blood_cells 23 .39 RPM
bodymap2_lymph_node 30 .92 RPM
bodymap2_ovary 28 .41 RPM
bodymap2_kidney 22 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001640 ortholog_one2one 5 retrogenes
retro_chof_1096, retro_chof_1171, retro_chof_2641, retro_chof_961, retro_chof_964,
Callithrix jacchus ENSCJAG00000007665 ortholog_one2one 1 retrogene
retro_cjac_2085,
Equus caballus ENSECAG00000020144 ortholog_one2one 1 retrogene
retro_ecab_569,
Echinops telfairi ENSETEG00000002623 ortholog_one2one 1 retrogene
retro_etel_1116,
Homo sapiens ENSG00000088833 within_species_paralog 1 retrogene
retro_hsap_4050,
Homo sapiens ENSG00000215114 within_species_paralog 1 retrogene
retro_hsap_3923,
Gorilla gorilla ENSGGOG00000002445 ortholog_one2one 1 retrogene
retro_ggor_1463,
Myotis lucifugus ENSMLUG00000015640 ortholog_one2one 1 retrogene
retro_mluc_1195,
Macaca mulatta ENSMMUG00000006487 ortholog_one2one 1 retrogene
retro_mmul_2068,
Mus musculus ENSMUSG00000020634 ortholog_one2one 1 retrogene
retro_mmus_1007,
Nomascus leucogenys ENSNLEG00000000751 ortholog_one2one 1 retrogene
retro_nleu_2612,
Oryctolagus cuniculus ENSOCUG00000008783 ortholog_one2many 1 retrogene
retro_ocun_207,
Otolemur garnettii ENSOGAG00000000025 ortholog_one2one 1 retrogene
retro_ogar_1909,
Procavia capensis ENSPCAG00000011502 ortholog_one2one 4 retrogenes
retro_pcap_169, retro_pcap_255, retro_pcap_271, retro_pcap_323,
Pan troglodytes ENSPTRG00000011705 ortholog_one2one 1 retrogene
retro_ptro_1347,
Rattus norvegicus ENSRNOG00000004950 ortholog_one2one 2 retrogenes
retro_rnor_1746, retro_rnor_2966,
Sorex araneus ENSSARG00000010108 ortholog_one2one 1 retrogene
retro_sara_272,
Sus scrofa ENSSSCG00000026283 ortholog_one2one 1 retrogene
retro_sscr_537,
Tupaia belangeri ENSTBEG00000012158 ortholog_one2one 1 retrogene
retro_tbel_3887,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2025 82.72 92.23
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Download FASTA sequences of all ENSG00000173960 retrocopies