RetrogeneDB ID: | retro_ocun_207 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL019156:25708..26485(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023555 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000008783 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.72 % |
Parental protein coverage: | 99.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKKRNILAMSVSVVCESGSDNQCHNNNRQTNCEYFVDSLFEEAQKVGAKCLSPTEQKKQVDVSIKLWKNG |
K...N........VCESGSDNQCHNNNRQTNCEYFVDSLFEEAQKVGAKCLSPTEQKKQVDVSIKLWKNG | |
Retrocopy | KEVDNLESIKEEWVCESGSDNQCHNNNRQTNCEYFVDSLFEEAQKVGAKCLSPTEQKKQVDVSIKLWKNG |
Parental | FTVNDDFRSYSDGASQQFLNSIKKGELPSELQGVFDKEEVDVKVEDKKNEVCLSTKPVFQPFSGQGHRLG |
FTVNDDFRSYSDGASQQFLNSIKKGELPSELQGVFDKEEVDVKVEDKKNEVCLSTKPVFQPFSGQGHRLG | |
Retrocopy | FTVNDDFRSYSDGASQQFLNSIKKGELPSELQGVFDKEEVDVKVEDKKNEVCLSTKPVFQPFSGQGHRLG |
Parental | SATPKIVSKTKILEVENKSNLSTVPLNNLEPITNVRIWLANGKRIVQKFNISHRVSHIKDFIEKYQGSQR |
SATPKIVSKTKILEVENKSNLSTVPLNNLEPITNVRIWLANGKRIVQKFNISHRVSHIKDFIEKYQGSQR | |
Retrocopy | SATPKIVSKTKILEVENKSNLSTVPLNNLEPITNVRIWLANGKRIVQKFNISHRVSHIKDFIEKYQGSQR |
Parental | SPPFSLATALPFLRSLDETLTLEEADLQNAVIIQRLQKTVEPFRELP |
SPPFSLATALPFLRSLDETLTLEEADLQNAVIIQRLQKTVEPFRELP | |
Retrocopy | SPPFSLATALPFLRSLDETLTLEEADLQNAVIIQRLQKTVEPFRELP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .77 RPM | 1 .88 RPM |
SRP017611_kidney | 0 .30 RPM | 0 .51 RPM |
SRP017611_liver | 0 .23 RPM | 0 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001640 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007665 | 1 retrocopy | |
Equus caballus | ENSECAG00000020144 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002623 | 1 retrocopy | |
Homo sapiens | ENSG00000173960 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002445 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015640 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006487 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020634 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000751 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008783 | 1 retrocopy |
retro_ocun_207 ,
|
Oryctolagus cuniculus | ENSOCUG00000023461 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000025 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011502 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000011705 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004950 | 2 retrocopies | |
Sorex araneus | ENSSARG00000010108 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026283 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012158 | 1 retrocopy |