Parental gene: | RAP1B, ENSMODG00000007323 |
| Aliases: | None |
| Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 8:27147588..27193873(-) |
>ENSMODG00000007323
ATGCGTGAATACAAGCTAGTTGTTCTTGGCTCAGGAGGTGTTGGAAAGTCTGCCCTGACTGTACAGTTTGTTCAAGGAAT
ATTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCTCAACAATGCATGCTTG
AAATCTTGGACACTGCAGGAACGGAACAATTTACGGCAATGAGAGATTTGTACATGAAAAATGGGCAAGGCTTTGCATTA
GTCTACTCTATCACAGCACAGTCCACGTTTAATGATTTACAAGATCTTCGAGAACAAATACTTCGAGTTAAAGACACTGA
TGATGTGCCAATGATTCTTGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGAAAAGAGCAAGGACAGAACC
TAGCAAGACAATGGAACAACTGTGCGTTCTTAGAATCCTCTGCTAAATCAAAGATAAACGTTAATGAGATCTTTTATGAT
CTAGTCCGGCAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCACGTAAAAAGTCATCATGTCAATTGCTTTAA
ATGCGTGAATACAAGCTAGTTGTTCTTGGCTCAGGAGGTGTTGGAAAGTCTGCCCTGACTGTACAGTTTGTTCAAGGAAT
ATTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCTCAACAATGCATGCTTG
AAATCTTGGACACTGCAGGAACGGAACAATTTACGGCAATGAGAGATTTGTACATGAAAAATGGGCAAGGCTTTGCATTA
GTCTACTCTATCACAGCACAGTCCACGTTTAATGATTTACAAGATCTTCGAGAACAAATACTTCGAGTTAAAGACACTGA
TGATGTGCCAATGATTCTTGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGAAAAGAGCAAGGACAGAACC
TAGCAAGACAATGGAACAACTGTGCGTTCTTAGAATCCTCTGCTAAATCAAAGATAAACGTTAATGAGATCTTTTATGAT
CTAGTCCGGCAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCACGTAAAAAGTCATCATGTCAATTGCTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008637 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000008272 | ortholog_one2one | 4 retrogenes | |
| Dipodomys ordii | ENSDORG00000001086 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000242 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000127314 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000016460 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000016606 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000001323 | within_species_paralog | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000004590 | other_paralog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017458 | other_paralog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000005746 | possible_ortholog | 2 retrogenes | |
| Procavia capensis | ENSPCAG00000010977 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004751 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000021148 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000030014 | possible_ortholog | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000015712 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000000931 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_11 | 85.45 | 89.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mdom_429 | 84.56 | 73.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mdom_1570 | 82.70 | 98.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mdom_1756 | 86.67 | 57.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mdom_1897 | 86.13 | 93.48 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000007323 retrocopies