RetrogeneDB ID: | retro_vpac_283 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_3642:1881346..1881664(-) | ||
Located in intron of: | ENSVPAG00000003780 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSVPAG00000000931 | ||
Aliases: | None | ||
Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
Percent Identity: | 68.52 % |
Parental protein coverage: | 57.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLEDERVVGKEQGQNLARQWNN |
....Q.FAL.YSI..QSTFNDLQDL..Q...VKD...DV..ILVG.KCDLE..RVVGKEQGQN.ARQWNN | |
Retrocopy | IRGRQDFALFYSIISQSTFNDLQDLGKQRTTVKDCS>DVLEILVGDKCDLEHDRVVGKEQGQNVARQWNN |
Parental | CAFLESSAKSKINVNE-IFYDLVRQINRKTPVPGKARK |
CAFLESSAK.KI..NE.I..D...QINRKTP..GK.RK | |
Retrocopy | CAFLESSAK*KISINE<ISCDPEWQINRKTPLSGKTRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000001086 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000242 | 1 retrocopy | |
Homo sapiens | ENSG00000127314 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016606 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007323 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000010977 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004751 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000015712 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000000931 | 2 retrocopies |
retro_vpac_283 , retro_vpac_408,
|
Vicugna pacos | ENSVPAG00000002810 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010033 | 1 retrocopy |