Parental gene:

RAP1B, ENSVPAG00000000931

Aliases:None
Description:RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_859:340639..346694(+)


>ENSVPAG00000000931
ATGCGTGAGTATAAGCTAGTCGTTCTTGGCTCGGGAGGCGTTGGAAAATCTGCTCTGACTGTACAATTTGTTCAAGGAAT
TTTTGTTGAGAAATACGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCACAACAGTGTATGCTTG
AAATCTTGGATACTGCAGGAACGGAACAATTTACAGCAATGAGGGATTTGTACATGAAAAATGGACAAGGCTTTGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAATGATTTACAAGATCTCAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCAATGATTCTGGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGAAAGGAACAAGGTCAAAATC
TAGCAAGACAGTGGAACAACTGTGCATTCTTAGAATCCTCTGCGAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
CTAGTGCGGCAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCCCGCAAAAAGTCGTCATGTCAGCTGCTTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008637 possible_ortholog 1 retrogene
retro_amel_103,
Cavia porcellus ENSCPOG00000008272 ortholog_one2one 4 retrogenes
retro_cpor_1194, retro_cpor_632, retro_cpor_739, retro_cpor_85,
Dipodomys ordii ENSDORG00000001086 ortholog_one2one 1 retrogene
retro_dord_521,
Echinops telfairi ENSETEG00000000242 ortholog_one2one 1 retrogene
retro_etel_11,
Homo sapiens ENSG00000127314 ortholog_one2one 2 retrogenes
retro_hsap_3338, retro_hsap_4234,
Loxodonta africana ENSLAFG00000016460 ortholog_one2one 1 retrogene
retro_lafr_482,
Myotis lucifugus ENSMLUG00000016606 ortholog_one2one 2 retrogenes
retro_mluc_1126, retro_mluc_2211,
Monodelphis domestica ENSMODG00000007323 ortholog_one2one 5 retrogenes
retro_mdom_11, retro_mdom_1570, retro_mdom_1756, retro_mdom_1897, retro_mdom_429,
Otolemur garnettii ENSOGAG00000005746 possible_ortholog 2 retrogenes
retro_ogar_2260, retro_ogar_272,
Procavia capensis ENSPCAG00000010977 ortholog_one2one 1 retrogene
retro_pcap_8,
Pongo abelii ENSPPYG00000004751 ortholog_one2one 1 retrogene
retro_pabe_3403,
Sus scrofa ENSSSCG00000021148 ortholog_one2one 1 retrogene
retro_sscr_1125,
Sus scrofa ENSSSCG00000030014 possible_ortholog 2 retrogenes
retro_sscr_435, retro_sscr_909,
Tursiops truncatus ENSTTRG00000015712 ortholog_one2one 2 retrogenes
retro_ttru_1105, retro_ttru_134,
Vicugna pacos ENSVPAG00000002810 other_paralog 1 retrogene
retro_vpac_211,
Vicugna pacos ENSVPAG00000010033 within_species_paralog 1 retrogene
retro_vpac_491,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_283 68.52 57.61
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2. retro_vpac_408 68.52 57.61
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Download FASTA sequences of all ENSVPAG00000000931 retrocopies